MmuEX0015093 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30843330-30847551:+
Coord C1 exon
chr17:30843330-30843456
Coord A exon
chr17:30845236-30845471
Coord C2 exon
chr17:30847447-30847551
Length
236 bp
Sequences
Splice sites
3' ss Seq
GGCTTTCCCGTCCTCTCCAGAGC
3' ss Score
9.36
5' ss Seq
GAAGTGAGC
5' ss Score
5.01
Exon sequences
Seq C1 exon
GAGTTTTTGGCCAACAACCCTTCCCTGACTGAGATCCGATCAGAAATCCTCCACTATGCCACCCTTGAGCAAGAGATCAAGGAACTGAAGCCCATTATTGTTGTAGGATCCCTGGAACTGCACACAG
Seq A exon
AGCCAATGAAGTTAGCCTTATCGATCGAGGCCAAAGCGTGGAAGATGCTGCTCTGTCGCTACTTAAATGAAGAATATAAGAAGAAAATGTCAGACATGATAACGTTTATCAACGAATACTTGAAAAAGTTGTCCAGACCCATCCGAGACTTGGACGATGTCAGATTCGCTATGGAAGCTTTGTCTTGTATTCGAGATAATGAAATTCAAATGGACATGACTTTGGGGCCAATTGAA
Seq C2 exon
GAAGCCTACGGCATTTTGAACAGATTTGAGGTCAAAGTGACCAAGGAAGAGTCCGAAGGCGTTGACACCCTGAGATACTCATTCAACAAATTACAGAGCAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'32-29,'32-28,33-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGCCAACAACCCTTCCC
R:
AGCTTTGCTCTGTAATTTGTTGA
Band lengths:
228-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: