HsaEX6047060 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38791338-38796064:+
Coord C1 exon
chr6:38791338-38791464
Coord A exon
chr6:38793932-38794167
Coord C2 exon
chr6:38795960-38796064
Length
236 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTGTCTTCATCAGAGC
3' ss Score
9.6
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GAATTTTTGGCTAACAACCCCTCTCTGACTGAAATCAGATCAGAAATTCTACACTATGCTACTTTTGAACAGGAGATTGATGAGTTGAAGCCTATTATTGTTGTAGGAGCACTTGAATTACATACAG
Seq A exon
AGCCGATGAAATTGGCCTTATCCATCGAGGCCAAGGCATGGAAGATGTTACTCTGTCGATATCTGAATGAAGAATACAAAAAGAAAATGTCATACATGATAGCATTTATTAATGAATACTTGAAAAAGTTATCTAGACCTATTCGTGATTTAGATGATGTCAGATTTGCAATGGAAGCCTTGTCTTGCATACGTGATAATGAAATTCAAATGGACATGACTTTGGGACCAATTGAA
Seq C2 exon
GAAGCCTATGCTATTTTAAACAGATTTGAAGTTGAAGTAACCAAAGAAGAATCAGAAGCAGTTGATACCTTAAGATATTCTTTCAACAAATTGCAGAGCAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'29-32,'29-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTTTTGGCTAACAACCCCTCT
R:
TTGCTCTGCAATTTGTTGAAAGA
Band lengths:
228-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)