RnoEX0028609 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9387605-9391919:+
Coord C1 exon
chr20:9387605-9387731
Coord A exon
chr20:9389495-9389730
Coord C2 exon
chr20:9391815-9391919
Length
236 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTCGTTCCCTCCAGAGC
3' ss Score
11.22
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GAGTTTTTGGCCAACAACCCTTCCCTGACTGAGATCCGATCAGAAATTCTCCACTATGCAACCTTTGAGCAGGAGATCGAGGAACTGAAGCCCATTATTGATGTAGGAGCCTTGGAGCTGCACACAG
Seq A exon
AGCCAATGAAGTTAGCCTTGTCCATCGAGGCCAAGGCGTGGAAGATGTTGCTCTGCCGCTACCTAAATGAGGAATATAAGAAGAAAATGTCAGACATGATAGTGTTTATCAACGAATACTTGAAAAAGTTATCCAGACCCATCCGGGACTTAGACGATGTCAGGTTCGCCATGGAGGCTTTGTCCTGTATCCGAGATAATGAAATTCAAATGGACATGACCTTGGGGCCCATAGAA
Seq C2 exon
GAGGCCTACGGCATTTTGAACAGATTCGAGGTGGAAGTGACCAAGGAGGAGTCAGAAGGCGTCGACACCCTGAGATACTCGTTCAACAAGTTGCAGAGCAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'53-57,'53-56,54-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTTTGGCCAACAACCCT
R:
TTGCTCTGCAACTTGTTGAACG
Band lengths:
228-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]