BtaEX6097390 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12593455-12599258:+
Coord C1 exon
chr23:12593455-12593652
Coord A exon
chr23:12596892-12596968
Coord C2 exon
chr23:12599159-12599258
Length
77 bp
Sequences
Splice sites
3' ss Seq
ACATTAATATTGCATTTCAGGTA
3' ss Score
9.61
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATTACAGAAATGATAACTGTTGTGCAAACATACTCAACCTTAAACAATTCTACCATAGAGGGAATAGACATTTTGGCAATAAAATTCAAAAATATATATCAAGGGGTTAAGAAGAAACAGTATGACATTCTGGATCCAAGAAGGACAGAATTTGACACAGATTTCTTAGATTTTATGACAAAAATCAATGCTTTAGAG
Seq A exon
GTACAGATACAGGCATTTATGAACAGTAGTTTTGGAAAAATTCTATCTTCTCAGCAGGCTCTTCAACTGCTTCAAAG
Seq C2 exon
ATTCCAGAAACTGAACATTCCCTGTCTGCAGTTAGAAATAAACCACACCATTGAGCGTATTCTTCAGTATTATGTGGCTGAACTTGAAGCTACCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'13-14,'13-13,14-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.6=100)
A:
PF083857=DHC_N1=FE(4.5=100)
C2:
PF083857=DHC_N1=FE(5.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTCTGGATCCAAGAAGG
R:
GGTAGCTTCAAGTTCAGCCACA
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]