MmuEX6076602 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30800243-30807656:+
Coord C1 exon
chr17:30800243-30800440
Coord A exon
chr17:30805219-30805295
Coord C2 exon
chr17:30807557-30807656
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATGTTAATGTTCTATTTTAGATT
3' ss Score
10.87
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
ATTACAGAGATGATAACCATTGTGCAGACATACTCAGCCTTGAGCAACTCTACAATCGAAGGAATCGATATCCTGGGGATAAAGTTCAAAAACATCTACCAGGGCATTAAGAAGAACCAATATGACATCCTGGATCCACGGAGAACAGAATTTGACACAGACTTCACAGAGTTTATGGGGAAAATCAATATTTTAGAG
Seq A exon
ATTCAAATCCAGGCGTTTATGAACAGCACCTTTGGAAAGATCTTGTCCTCCCAGCAGGCTCTGCAGCTGCTTCAGAG
Seq C2 exon
GTTTCAGAAGCTGAACATCCCCTGCCTTCACCTGGAAATCAATCACACAATTGAACGGATTCTTCAGTGCTATGTGGCTGAACTTGAATTTACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'15-14,'15-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.6=100)
A:
PF083857=DHC_N1=FE(4.5=100)
C2:
PF083857=DHC_N1=FE(5.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAATCGATATCCTGGGGA
R:
GATTTCCAGGTGAAGGCAGGG
Band lengths:
181-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: