GgaEX6029602 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30709499-30710467:-
Coord C1 exon
chr3:30710270-30710467
Coord A exon
chr3:30710053-30710129
Coord C2 exon
chr3:30709499-30709598
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTAAATTATGTGTCTCTTAGGTA
3' ss Score
8.4
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ATTACAGAGATGATAAATGTAGTACAAACCTTTCGTGCACTGAGTATGTCTACCATTGAAGGTATAGATATTATGGCAATAAAGTTCAAAAATATCTATCAAAGTGTTCAAAAGAAACAATACGACATCCTTGATCCAAGAAAAACAGAATTTGATGTGGATTTTGTGGACTTCATGGCAAAAATTGAAGGTTTAGAG
Seq A exon
GTACAGATACAAACATTTATGCGAACTTGTTTTGGAAGAATTTTGTCTTCACAACACGCACTCCAGTTACTGCAAAG
Seq C2 exon
ATTTCAGAATCTGAGAATGCCATGCCTTCAAGAAGAAGTCAGATATACAGTTGCTTGTATTCTTCAACATTATGTAGCAGAACTTGAAGCTATTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.6=100)
A:
PF083857=DHC_N1=FE(4.5=100)
C2:
PF083857=DHC_N1=FE(5.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACATCCTTGATCCAAGAA
R:
AGCTTCAAGTTCTGCTACATAATGT
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]