RnoEX6062094 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9345318-9352332:+
Coord C1 exon
chr20:9345318-9345518
Coord A exon
chr20:9350260-9350336
Coord C2 exon
chr20:9352233-9352332
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATGTTGATGTTCTGTTTTAGATT
3' ss Score
10.93
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
AAGATCACGGAGATGATAACCATCGTGCAAACATACTCGGCCTTGAGCAACTCTACGATCGAAGGGATCGATATTTTGGGGATCAAGTTTAAAAACATTTACCAGGGGATCAAGAAGAACCAATATGACATCCTGGACCCGCGAAGAACAGAATTTGACACAGACTTCTCAGATTTTATGGGGAAAATCAACACGTTAGAG
Seq A exon
ATTCAAATACAGGCATTTATGAACATTACCTTTGGAAAGATCTTGTCCTCCCAGCAGGCGCTTCAGCTGCTCCAGAG
Seq C2 exon
GTTTCAGAAGCTGAACATGCCCTGCCTTCAGCTGGAAATCAATCACACCATTGAGCGGATTCTTCAGTGTTATGTGGCTGAACTTGAAGCTACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'32-37,'32-36,33-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.8=100)
A:
PF083857=DHC_N1=FE(4.5=100)
C2:
PF083857=DHC_N1=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACTCTACGATCGAAGGGA
R:
CAGGGCATGTTCAGCTTCTGA
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]