BtaEX6098192 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26982424-26983716:+
Coord C1 exon
chr23:26982424-26982537
Coord A exon
chr23:26982627-26982749
Coord C2 exon
chr23:26983557-26983716
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATTCCCCTGTTGTACCATAGGCT
3' ss Score
9
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTTTCACTGGCCCCCGGTGTGAGGAGGACATCAACGAATGTCAAAGCTCTCCCTGTGCCAATGGCGGGGAGTGCCAGGACCAGCCTGGATCCTTCCATTGCAAGTGTCCCCCAG
Seq A exon
GCTTTGAAGGCCCACGCTGTCAGGAGGAGGTGGACGAGTGTCTGAGTGGCCCATGCCCCACCGGAGCCAGCTGCCTTGACCTCCCAGGAGCTTTCCTTTGCGTCTGCCCCTCTGGCTTCACAG
Seq C2 exon
GCCATCTCTGTGAAATTCCCCTGTGTGCCCCCAACCTGTGCCAGCCCAAACAAAAATGTCAGGATCAGGAGGACAATGCCCACTGCCTCTGCCCTGATGGAAACCCAGGCTGTGTCCCCACAGAAGACAACTGCACCTGCCACCATGGGCACTGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=12.8),PF0764510=EGF_CA=PU(74.4=74.4)
A:
PF0764510=EGF_CA=PD(23.1=21.4),PF0764510=EGF_CA=PU(78.0=76.2)
C2:
PF0764510=EGF_CA=PD(19.5=14.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGAGGAGGACATCAACG
R:
GTGGCAGGTGCAGTTGTCTTC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]