GgaEX1040085 @ galGal3
Exon Skipping
Gene
ENSGALG00000002375 | Q9W737_CHICK
Description
NA
Coordinates
chr17:8515722-8517420:+
Coord C1 exon
chr17:8515722-8515835
Coord A exon
chr17:8516804-8517037
Coord C2 exon
chr17:8517310-8517420
Length
234 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCCAATGGCTCCAGGTT
3' ss Score
6.99
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGTTCAACGGGCTTTTGTGCCAGTTTGACATCGATGAGTGTGCCAGCACCCCCTTTAAGAATGGGGCCAAGTGCGTGGATGGCCCCAACACCTACAGCTGCGAGTGCACCGAAG
Seq A exon
GTTTCTCAGGTGTTCACTGTGAGATCGACATCGATGAGTGCAACCCCGACCCGTGCCACTATGGGACCTGCAAGGACAGCATCGCCGCCTTCACCTGCCTCTGCCAGCCCGGCTACACGGGCCACCGCTGCGACATCAACATCAATGAGTGCCAGAGCCAGCCCTGCAGAAACGGGGGGACCTGTCAGGACAGGGACAACGCCTACAACTGTCTGTGCCTCAAGGGGACCACGG
Seq C2 exon
GGCCCAACTGCGAGATCAACCTGGACGACTGCGCCAGCAACCCCTGCGACTACGGCAAGTGCATCGACAAGATCAACGGCTATGAGTGCACCTGTGAGCCGGGGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
A:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=38.0),PF0000822=EGF=PU(90.3=35.4)
C2:
PF0000822=EGF=PD(6.5=5.3),PF0000822=EGF=PU(93.1=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCAACGGGCTTTTGTGC
R:
CTGTGTACCCCGGCTCACAG
Band lengths:
225-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]