DreEX6014328 @ danRer10
Exon Skipping
Gene
ENSDARG00000052094 | notch1b
Description
notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
Coordinates
chr5:65045209-65047176:-
Coord C1 exon
chr5:65047063-65047176
Coord A exon
chr5:65045840-65046073
Coord C2 exon
chr5:65045209-65045319
Length
234 bp
Sequences
Splice sites
3' ss Seq
TGAGTCTGTTTTGCTTTCAGGAT
3' ss Score
10.6
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
GATTTTCGGGGAGCCAATGCCAGTTCGACATTGACGAGTGCGCTAGTACTCCTTGTAAAAATGGGGCCAAGTGTATGGATGGGCCCAATATGTACACCTGCCAGTGCACTGAAG
Seq A exon
GATACACAGGGCAGCACTGTGAGACAGATGTAGATGAGTGTCTGTCCAACCCGTGTCACTACGGCACCTGTAAAGATGGCCTGGCGTCCTTCACCTGCGTCTGCCGTGCGGGTTTCATGGGCCGTCTGTGCGAGATCAACATTAATGAGTGTCTCAGTCAGCCATGCCAAAACGGAGGCACCTGCCAGGACCGTGAGAATGCCTACTTGTGTGTCTGCCCCAAAGGAACTGCAG
Seq C2 exon
GAGCTAACTGTGAGATCAACCTGGATGACTGTCAGAGCAATCCCTGTGATTTCGGGAGATGCATCGACAAGATAAATGGGTACGAGTGTGCCTGCGAACCGGGATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052094-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
A:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=38.0),PF0000822=EGF=PU(90.3=35.4)
C2:
PF0000822=EGF=PD(6.5=5.3),PF0000822=EGF=PU(93.1=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTTCGGGGAGCCAATGCC
R:
CTGTGTATCCCGGTTCGCAG
Band lengths:
225-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]