RnoEX6016000 @ rn6
Exon Skipping
Gene
ENSRNOG00000019322 | Notch1
Description
notch 1 [Source:RGD Symbol;Acc:3187]
Coordinates
chr3:3925358-3926189:-
Coord C1 exon
chr3:3926076-3926189
Coord A exon
chr3:3925548-3925781
Coord C2 exon
chr3:3925358-3925468
Length
234 bp
Sequences
Splice sites
3' ss Seq
CCACCTTTCCTGCCATCTAGGTT
3' ss Score
10.05
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCTTCAGCGGGCACCTGTGCCAGTATGACGTGGATGAGTGCGCCAGCACACCATGCAAGAACGGCGCCAAGTGCCTGGATGGGCCCAACACCTACACCTGCGTGTGCACAGAAG
Seq A exon
GTTACACGGGGACCCACTGCGAGGTGGACATTGACGAGTGTGACCCTGACCCCTGTCACTATGGTTTGTGCAAGGATGGTGTGGCCACCTTTACCTGCCTCTGCCAGCCAGGCTACACAGGCCATCACTGTGAGACCAACATTAATGAGTGTCACAGCCAGCCGTGCCGCCATGGCGGCACCTGCCAGGACCGTGACAACTACTACCTCTGCTTATGCCTCAAGGGGACCACAG
Seq C2 exon
GACCCAACTGTGAGATCAATCTGGATGACTGTGCGAGCAACCCCTGTGACTCTGGCACGTGTCTGGACAAGATCGATGGCTACGAGTGTGCGTGCGAGCCAGGCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019322-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
A:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=38.0),PF0000822=EGF=PU(90.3=35.4)
C2:
PF0000822=EGF=PD(6.5=5.3),PF0000822=EGF=PU(93.1=71.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTGCCAGTATGACGTG
R:
GTGTAGCCTGGCTCGCAC
Band lengths:
212-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]