BtaEX6047233 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:104005216-104006032:-
Coord C1 exon
chr11:104005919-104006032
Coord A exon
chr11:104005419-104005652
Coord C2 exon
chr11:104005216-104005326
Length
234 bp
Sequences
Splice sites
3' ss Seq
GCGGCCCCCCGCCCCTGCAGGCT
3' ss Score
8.62
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
GCTTCACCGGGCACTTGTGCCAGTATGACGTGGACGAGTGTGCAAGCACACCCTGCAAGAACGGCGCTAAGTGCCTGGACGGGCCCAACACCTACACCTGCGTGTGCACAGAAG
Seq A exon
GCTACACGGGGCCCCACTGCGAGGTGGACATCGACGAGTGTGACCCCGACCCCTGCCACTACGGGTCCTGCAAGGACGGCGTGGCCACCTTCACCTGCCTGTGCCAGCCGGGCTACACGGGCCACCACTGTGAGAGCAACATTAACGAGTGCCACAGCCAGCCCTGCCGCCACGGGGGCACCTGCCAGGACCGCGACAACGCCTATCTCTGCTTCTGCCTCAAGGGGACCACAG
Seq C2 exon
GACCCAACTGCGAGATCAACCTGGATGACTGCGCAAGCAACCCTTGCGACTCCGGCACGTGTCTGGACAAGATTGACGGCTACGAGTGTGCCTGTGAGCCAGGCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
A:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=38.0),PF0000822=EGF=PU(90.3=35.4)
C2:
PF0000822=EGF=PD(6.5=5.3),PF0000822=EGF=PU(93.1=71.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCGGGCACTTGTGC
R:
CTGTGTAGCCTGGCTCACAG
Band lengths:
224-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]