MmuEX0032063 @ mm10
Exon Skipping
Gene
ENSMUSG00000015468 | Notch4
Description
notch 4 [Source:MGI Symbol;Acc:MGI:107471]
Coordinates
chr17:34572496-34573908:+
Coord C1 exon
chr17:34572496-34572609
Coord A exon
chr17:34572678-34572800
Coord C2 exon
chr17:34573749-34573908
Length
123 bp
Sequences
Splice sites
3' ss Seq
AACCCACCCCTCTGCCACAGGCT
3' ss Score
7.09
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GATTCACCGGCGCCCGATGTGAGAAAGACATGGACGAGTGTAGCAGCACCCCCTGTGCCAATGGGGGGCGCTGCCGAGACCAGCCTGGAGCCTTCTACTGCGAGTGTCTCCCAG
Seq A exon
GCTTTGAAGGGCCACACTGTGAGAAAGAAGTGGACGAATGTCTGAGTGACCCCTGCCCCGTGGGAGCCAGCTGCCTTGATCTCCCCGGAGCATTCTTCTGCCTCTGCCGTCCTGGTTTCACAG
Seq C2 exon
GTCAACTTTGTGAGGTTCCCTTGTGCACCCCCAACATGTGCCAACCTGGACAGCAATGCCAAGGTCAGGAACACAGAGCCCCCTGCCTCTGCCCTGACGGAAGTCCTGGCTGTGTTCCTGCCGAGGACAACTGCCCCTGTCACCATGGCCATTGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015468-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
A:
PF0000822=EGF=PD(16.1=11.9),PF0000822=EGF=PU(90.3=66.7)
C2:
PF0000822=EGF=PD(6.5=3.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCGATGTGAGAAAGACAT
R:
TGACAGGGGCAGTTGTCCTC
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types