GgaEX1040092 @ galGal3
Exon Skipping
Gene
ENSGALG00000002922 | NOTCH2
Description
NA
Coordinates
chr8:4233190-4235784:+
Coord C1 exon
chr8:4233190-4233423
Coord A exon
chr8:4233860-4233970
Coord C2 exon
chr8:4235592-4235784
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATTTATCCTTTTTTTCCAGGAG
3' ss Score
8.85
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTTTACTGGTGTTTTGTGTGAGGAGAACATCAACAACTGTGATCCTGATCCTTGCCATCACGGTGAATGTCAAGATGGGATCGATTCCTACACTTGTATATGCAATCCTGGCTACATGGGTGCCATATGCAGTGAGCAGATCAATGAATGCCACAGTAATCCTTGCCTCCATCAAGGGCGCTGCATTGACTTGGTGAATGGCTACCAATGCAACTGTTTGCCGGGCACTTCAG
Seq A exon
GAGTGAACTGTGAGAATAACTTTGATGACTGTGCAAGTAACCCATGCGTTCACGGGGACTGCATTGATGGCATTAATCGCTACAACTGTGCTTGCAAACCTGGATTTACAG
Seq C2 exon
GCCCACGTTGTAATGTGGATATTGATGAATGCGCATCCAGCCCCTGTAATAATGGTGGAACATGTATAAATGAAGTCAATGGCTTTCGCTGTGTATGTCCTGAAGGTTACCATCATCCTCACTGCCAGTCACAGGCAGATGGCTGTCTTAGTAATCCCTGTGTACATGGCAACTGCACGCACATTGTTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002922-'15-21,'15-20,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(13.3=5.1),PF0000822=EGF=WD(100=36.7),PF0000822=EGF=PU(90.3=35.4)
A:
PF0000822=EGF=PD(6.5=5.3),PF0000822=EGF=PU(90.0=71.1)
C2:
PF0000822=EGF=PD(6.7=3.1),PF0764510=EGF_CA=WD(100=66.2),PF0000822=EGF=PU(53.3=24.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACATGGGTGCCATATGC
R:
TGTGACTGGCAGTGAGGATGA
Band lengths:
257-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]