BtaEX6015463 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007909 | NOTCH2
Description
notch 2 [Source:HGNC Symbol;Acc:HGNC:7882]
Coordinates
chr3:23426577-23438726:+
Coord C1 exon
chr3:23426577-23426810
Coord A exon
chr3:23431631-23431741
Coord C2 exon
chr3:23438534-23438726
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTTCATCTTTGCAGGTG
3' ss Score
12.66
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GATTCACTGGTGTGTTGTGTGAGGAGAACATTGACAACTGTGACCCTGATCCTTGCCACCACGGCCAGTGTCAGGATGGCATTGATTCCTACACCTGCATTTGCAATCCGGGCTACATGGGCGCCATCTGCAGTGACCAGATAGACGAATGCTACAGCAGCCCTTGCCTGAATGAGGGTCGCTGCATCGACCTGGTGAATGGTTACCAGTGCAACTGCCAGCCAGGCACGTCAG
Seq A exon
GTGTTAATTGTGAAATCAATTTTGATGACTGTGCAAGTAACCCGTGTGTCCATGGAGTCTGTATGGATGGCGTTAATCGTTACAGCTGTGTCTGCTCACCAGGATTCACAG
Seq C2 exon
GGCAGAGATGTAACATTGACATTGATGAGTGTGCCTCCAATCCCTGTCGCAAGGGTGCAACGTGCATCAATGATGTGAATGGTTTCCGCTGTATCTGCCCTGAGGGCCCCCACCATCCCAGCTGCTACTCACAGGTGAACGAGTGCCTGAGCAATCCCTGTGTCCATGGAAACTGTACTGGGGGCCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007909-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(13.3=5.1),PF0000822=EGF=WD(100=36.7),PF0000822=EGF=PU(92.1=44.3)
A:
PF0000822=EGF=PD(5.3=5.3),PF0000822=EGF=PU(90.0=71.1)
C2:
PF0000822=EGF=PD(6.7=3.1),PF0764510=EGF_CA=WD(100=55.4),PF0000822=EGF=PU(53.3=24.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATGAGGGTCGCTGCATC
R:
GCCCCCAGTACAGTTTCCATG
Band lengths:
252-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]