DreEX0051111 @ danRer10
Exon Skipping
Gene
ENSDARG00000103554 | notch1a
Description
notch 1a [Source:ZFIN;Acc:ZDB-GENE-990415-173]
Coordinates
chr21:4630961-4637840:-
Coord C1 exon
chr21:4637607-4637840
Coord A exon
chr21:4635650-4635760
Coord C2 exon
chr21:4630961-4631299
Length
111 bp
Sequences
Splice sites
3' ss Seq
AAGTGTCTCTGCGTTGGCAGGTG
3' ss Score
6.15
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTTTTCTGGCATTCACTGTGAGCTGGACATCAACGAGTGTGCGTCGAGCCCTTGTCATTATGGTGTGTGTCGTGACGGTGTGGCCTCCTTCACCTGCGACTGCCGGCCTGGATACACCGGACGCTTGTGTGAAACCAACATCAACGAGTGTCTGAGCCAACCCTGCCGAAACGGAGGAACCTGCCAGGACAGAGAGAACGCCTACATCTGTACCTGTCCTAAAGGAACCACAG
Seq A exon
GTGTGAACTGCGAGATCAACATTGACGACTGCAAGAGAAAGCCATGTGACTATGGAAAGTGCATAGACAAGATTAATGGCTATGAGTGTGTCTGCGAACCCGGATACTCAG
Seq C2 exon
GCTCAATGTGCAACATCAACATTGACGACTGCGCGTTGAACCCATGCCACAACGGCGGCACCTGTATTGACGGTGTGAACAGCTTTACCTGTCTGTGTCCCGACGGTTTTCGGGATGCCACCTGCCTCTCGCAGCACAACGAGTGCTCCAGCAACCCCTGCATCCACGGCAGCTGCCTGGACCAGATCAACAGCTACAGGTGTGTGTGTGAGGCCGGCTGGATGGGCCGCAACTGCGACATCAACATCAACGAGTGCCTGTCCAACCCCTGCGTGAACGGAGGAACCTGCAAAGACATGACCAGTGGATACCTGTGCACATGCAGAGCCGGATTCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103554_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=38.0),PF0000822=EGF=PU(90.3=35.4)
A:
PF0000822=EGF=PD(6.5=5.3),PF0000822=EGF=PU(93.1=71.1)
C2:
PF0000822=EGF=PD(3.4=0.9),PF0000822=EGF=WD(100=27.2),PF0000822=EGF=WD(100=26.3),PF0000822=EGF=PU(90.3=24.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGACAGAGAGAACGCCTA
R:
CTGTTGATCTGGTCCAGGCAG
Band lengths:
243-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]