MmuEX6072813 @ mm10
Exon Skipping
Gene
ENSMUSG00000027878 | Notch2
Description
notch 2 [Source:MGI Symbol;Acc:MGI:97364]
Coordinates
chr3:98104349-98111742:+
Coord C1 exon
chr3:98104349-98104582
Coord A exon
chr3:98107047-98107157
Coord C2 exon
chr3:98111550-98111742
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGGGTCTCTTTACAGGCC
3' ss Score
10.97
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTCACTGGCATATTGTGTGATGAGAACATCGACAACTGTGACCCAGATCCTTGCCACCATGGCCAGTGCCAGGATGGGATCGACTCCTACACCTGCATCTGCAACCCTGGGTACATGGGAGCCATCTGTAGTGACCAGATTGATGAATGCTACAGCAGCCCTTGCTTGAACGATGGGCGCTGCATTGACCTGGTGAATGGTTACCAGTGCAACTGCCAACCAGGCACATCAG
Seq A exon
GCCTTAATTGTGAAATTAATTTTGATGACTGTGCCAGCAACCCTTGTATGCACGGAGTCTGTGTGGACGGCATCAATCGCTACAGCTGTGTGTGCTCTCCGGGATTCACAG
Seq C2 exon
GCCAGAGGTGCAATATTGACATTGATGAGTGTGCCTCCAACCCCTGTCGCAAGGGTGCGACGTGCATCAATGATGTGAATGGTTTCCGGTGTATATGCCCCGAGGGACCGCATCATCCTAGCTGCTACTCACAGGTGAACGAGTGCCTGAGCAATCCCTGCATCCACGGAAACTGTACTGGAGGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027878-'25-25,'25-23,26-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=36.7),PF0000822=EGF=PU(92.1=44.3)
A:
PF0000822=EGF=PD(5.3=5.3),PF0000822=EGF=PU(90.0=71.1)
C2:
PF0000822=EGF=PD(6.7=3.1),PF0764510=EGF_CA=WD(100=55.4),PF0000822=EGF=PU(53.3=24.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGACTCCTACACCTGCA
R:
CGGGGCATATACACCGGAAAC
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types