RnoEX6010763 @ rn6
Exon Skipping
Gene
ENSRNOG00000018835 | Notch2
Description
notch 2 [Source:RGD Symbol;Acc:3188]
Coordinates
chr2:200275001-200281938:+
Coord C1 exon
chr2:200275001-200275234
Coord A exon
chr2:200277637-200277747
Coord C2 exon
chr2:200281746-200281938
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGCCTCTGTTTACAGGCC
3' ss Score
11.64
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GATTCACTGGCACACTGTGTGATGAGAACATCGACAACTGTGACCCGGATCCTTGCCACCATGGCCAGTGCCAGGATGGGATTGACTCCTACACCTGCATCTGCAACCCCGGGTACATGGGAGCCATCTGTAGTGACCAGATTGATGAATGCTACAGCAGCCCCTGCCTGAATGATGGACGCTGCATCGACCTGGTGAACGGCTACCAGTGCAACTGCCAACCGGGTACCTCAG
Seq A exon
GCCTTAATTGTGAAATTAATTTTGATGACTGTGCCAGCAACCCTTGTCTGCACGGAGCCTGTGTGGACGGCATCAACCGTTACAGTTGTGTGTGCTCTCCGGGATTCACAG
Seq C2 exon
GGCAGAGGTGCAACATAGACATTGATGAGTGTGCCTCCAACCCCTGTCGCAAGGGTGCGACGTGCATCAATGACGTGAATGGTTTCCGGTGTATGTGCCCTGAGGGACCACACCATCCCAGCTGCTACTCACAGGTGAACGAGTGTTTGAGCAGTCCCTGCATCCATGGAAACTGTACTGGAGGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018835-'18-19,'18-16,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=36.7),PF0000822=EGF=PU(92.1=44.3)
A:
PF0000822=EGF=PD(5.3=5.3),PF0000822=EGF=PU(90.0=71.1)
C2:
PF0000822=EGF=PD(6.7=3.1),PF0764510=EGF_CA=WD(100=55.4),PF0000822=EGF=PU(53.3=24.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAGGATGGGATTGACTC
R:
CACCGGAAACCATTCACGTCA
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]