BtaEX6098356 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27280690-27282746:+
Coord C1 exon
chr23:27280690-27280730
Coord A exon
chr23:27280878-27281033
Coord C2 exon
chr23:27282609-27282746
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCAATCTTTTTCTAGTCA
3' ss Score
9.06
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGTGGCCAAAAGGAGGAAGCTGAACTCAGGAGGTGGCTTG
Seq A exon
TCAGAAGAGTTGGCTTCTACGCGGAGTTCGGGAGAAGTGACCCTGGAGAAGGGGGACCCCGGGTCCCTGGAGGAGTGGGAAACGGTGGTAGGGGATGACTTCAGCCTCTACTATGATTCCTACTCTGTGGATGAGCGGGTGGACTCTGACAGCAAG
Seq C2 exon
TCTGAGGTTGAAGCTCTGGCTGAACAACTGAGTGAGGAAGAGGAAGAGGAGGAGGAGGAAGAGGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGATGAAGAGTCTGGCAATCAGTCTGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676-'5-8,'5-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.962 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0334410=Daxx=PU(15.4=73.1)
C2:
PF0334410=Daxx=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGCCAAAAGGAGGAAGC
R:
CCTGTCAGACTGATTGCCAGAC
Band lengths:
179-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]