HsaEX6046376 @ hg19
Exon Skipping
Gene
ENSG00000204371 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:14129]
Coordinates
chr6:31857245-31860511:-
Coord C1 exon
chr6:31860471-31860511
Coord A exon
chr6:31860184-31860339
Coord C2 exon
chr6:31857245-31857379
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGATCTTTTTCTAGTCA
3' ss Score
9.17
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATCTGGCCAAAAGGAGGAAGCTGAACTCAGGAGGTGGCCTG
Seq A exon
TCAGAGGAGTTAGGTTCTGCCCGGCGTTCAGGAGAAGTGACCCTGACGAAAGGGGACCCCGGGTCCCTGGAGGAGTGGGAGACGGTGGTGGGTGATGACTTCAGTCTCTACTATGATTCCTACTCTGTGGATGAGCGCGTGGACTCCGACAGCAAG
Seq C2 exon
TCTGAAGTTGAAGCTCTAACTGAACAACTAAGTGAAGAGGAGGAGGAGGAAGAGGAGGAAGAAGAAGAAGAGGAAGAGGAGGAGGAAGAGGAAGAAGAAGAGGAAGATGAGGAGTCAGGGAATCAGTCAGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204371-'7-12,'7-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=1.000
Domain overlap (PFAM):
C1:
PF031538=TFIIA=FE(5.7=100),PF0334410=Daxx=PU(0.1=0.0)
A:
PF031538=TFIIA=FE(22.4=100),PF0334410=Daxx=PU(19.8=98.1)
C2:
PF031538=TFIIA=FE(19.3=100),PF0334410=Daxx=FE(21.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGCCAAAAGGAGGAAGC
R:
TGACTGATTCCCTGACTCCTCA
Band lengths:
170-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)