MmuEX0016482 @ mm9
Exon Skipping
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:35040127-35042211:+
Coord C1 exon
chr17:35040127-35040164
Coord A exon
chr17:35040268-35040423
Coord C2 exon
chr17:35042074-35042211
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTCATCTTTTTCTAGTCC
3' ss Score
8.67
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
ATGTGGCCAAAAGGAGGAAGCTGAACTCTGGTAGCCTG
Seq A exon
TCCGAGGACTTGGGCTCTGCCGGGGGCTCAGGAGATATAATCCTGGAGAAGGGAGAGCCCAGGCCCCTGGAGGAGTGGGAGACGGTGGTGGGCGATGACTTCAGCCTGTACTATGATGCGTACTCTGTGGATGAGCGGGTGGACTCTGACAGCAAG
Seq C2 exon
TCTGAAGTCGAAGCTCTAGCTGAACAGTTGAGTGAGGAGGAGGAGGAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAAGAGGACGAGGAGTCGGGCAATCAGTCAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.923 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF041477=Nop14=PU(35.8=94.2),PF0334410=Daxx=PU(10.4=40.4)
C2:
PF041477=Nop14=FE(32.8=100),PF0334410=Daxx=FE(22.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGCCAAAAGGAGGAAGC
R:
CTGTCTGACTGATTGCCCGAC
Band lengths:
175-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: