RnoEX0031275 @ rn6
Exon Skipping
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4581133-4583772:+
Coord C1 exon
chr20:4581133-4581170
Coord A exon
chr20:4581259-4581414
Coord C2 exon
chr20:4583635-4583772
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGATCTTTTCTCTAGTCA
3' ss Score
8.14
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
ATGTGGCCAAACGGAGGAAGTTGACCTCGGGCAGCCTG
Seq A exon
TCAGAGGACTTGGGCTCTGCTGGGGGCTCAGGAGAAGTGATCCTGGAGAAGGGAGAGCCCAGGCCTCTGGAGGAGTGGGAGACGGTGGTGGGCGATGACTTCAGCCTGTACTATGACGCGTACTCTGTGGATGAGCGGGTGGACTCTGACAGCAAG
Seq C2 exon
TCTGAAGTCGAAGCTCTAGCTGAACAGTTGAGTGAAGAGGAGGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGATGAGGAGTCGGGCAACCAGTCAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.962 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0334410=Daxx=PU(10.4=40.4)
C2:
PF0334410=Daxx=FE(22.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCAAACGGAGGAAGTTG
R:
TCTGACTGGTTGCCCGACTC
Band lengths:
170-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]