BtaEX6098752 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008943 | ZSCAN12
Description
Bos taurus zinc finger and SCAN domain containing 12 (ZSCAN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001077138]
Coordinates
chr23:30080717-30091413:+
Coord C1 exon
chr23:30080717-30081203
Coord A exon
chr23:30086981-30087119
Coord C2 exon
chr23:30088841-30091413
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTATATCTCATTTACCTCAGGTC
3' ss Score
7.39
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TTCCAGCCAGAAAAAAACGACACAGGAGATCTTGCTTGAAGCATTGATAAGCTTTTGTATAGCAATGATGGCATATACTTGGTCTATCCAGGCCATGAAGGACCGGGAAGAACTTTTGGAAGTAAAGATAGAGGAAGAGGAGCTGGAGGAGGAGCATAAATATGCCACTACACAGGATCAGAACCTTCAAAAGAACACCACCCACAGTAGGGAGGTCTTCCGACGGTACTTCAGGCAGTTCTGCTACCAGGAAACATCTGGGCCCCGTGAGGCTTTGAGCCGACTCCGGGAACTTTGCCATCAGTGGCTGAAGCCAGAGACCCACACCAAAGAGCAGATTCTGGAACTACTGGTGCTGGAGCAGTTCCTGACCATCTTGCCTGAGGAGCTCCAAGCCTGGGTCCAGGAACAGCATCCAGAGAGTGGGGAAGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAGTTGGATGAGCCAGGATATCAG
Seq A exon
GTCTCAGTCCGCAGTGAGGAACAAGAATTACAGGAGATCGTACCTCTAAGAACAGAACAAGAACCCAGAATATGCCTTCAGTCTGTGCAAGCCCAGCCAAAGTGTGAATCTGCAGAACTTGAAGCCCAACAGAAGCAAG
Seq C2 exon
ATATTGAGACTGGAAATGAGTATAGGAATTTAAAGCAAGAAGTTTCTCCAGAAATGAAACCATATGGGAATATAGCTAGCAAATTTGAAAATGAAATGTCTCAACCAGCTAGGTATGAAAAAACATATGAACCTGAAGAAAAAACAGGAGAGTCTTCTGAATATTCAAGGGAGGATAAAGAACCTACATGTGATGAAAATGGAGTAAGTTTGACTGAGAACTTAGATCTTTCTGAACACCAGAGAATTTGTCCAGGAGAAAAGCCTTATGTATGTGATGTCTGTGGAAGAGCTTTTAGTCAACACTCACGTTTTGTAGAACATCAGAGGATCCATACTGGAGACAGGCCCTACAAATGCAAAGAATGTGGAAAAACTTTCCGTGGGAGAACTGTGCTTATTCGACACAAAATAATACACACAGGAGAGAAACTCTATAAGTGTAATGAGTGTGGCAAAGCCTTTGCCCAGTGGTCAGCTCTTAATCAACATCAGAGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008943-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.532 C2=0.265
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCAGTTCCTGACCATCT
R:
CCTAGCTGGTTGAGACATTTCA
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]