RnoEX0102287 @ rn6
Exon Skipping
Gene
ENSRNOG00000052959 | Zscan12
Description
zinc finger and SCAN domain containing 12 [Source:RGD Symbol;Acc:628738]
Coordinates
chr17:45279162-45284256:-
Coord C1 exon
chr17:45283850-45284256
Coord A exon
chr17:45281153-45281297
Coord C2 exon
chr17:45279162-45280430
Length
145 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCTCATTTCTCACAGACC
3' ss Score
9.93
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CTATGATGGCATCCACTAACGATACCAAGATCTGTAAGAACCAAGATGGACTTTTGGAAATAAAAATGGAGGAAGAGTGTAAGTATACCACCAGACAAGTTAGGAACCTCCAAAAGAACACTTATAACAGAGACGTCTTCCGAAAATACTTCAGACAGTTTTGCTACCAGGAAACATCTGGACCCCGGGAGGCTTTGAGCCGACTCCGGGAACTTTGCCATCAGTGGTTGCGACCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAACAGTTCTTGACCATCCTGCCTGAGGAGCTGCAGGCCTGGGTGCAGGAGCAGAATCCTGAGAGTGTGGAGGAGGTAGTGACTGTGCTGGAGGATTTAGAGAGAGAACTAGATGAACTAGGATACCGG
Seq A exon
ACCTCAGTCCAAATTGAAAAGCAGGAAATGTTGTTACGGGAGACGAAGCCTTTAGCAGCAGAGCAGAAACCCAGTGTGTCCCTTCAGTTTGTCAAAGCTAAGCCAGGGTGTGAACTTGCAGACGGTGAAGCCCAGGAGGAACAAG
Seq C2 exon
TTTCAGGTATTGAGACTGGAAATGAATCCAGGAATGTAACTCTAAAGCAAGGCCTCTGGGAAGGAATGGAAGCAGAACAGAATCCCTCTAGCAGATTAGCAAAGGATACGCTTAAGTGTGAAGAAACTCGTGACCCTAGAGAAGAGTCTTCTGGTATTTCCCGTGAAGACAGCCAGCCACTGCGTAATGAAAATGTGGTAAATTTGACTGAGAACTCAAACCACGCTGAACTCCAGAACATCTGTCCAGGGCGAAAAGTGCATGGATGTGATGAGTGTGGAAAGACTTTTAGTCAGCACTCCCGCCTCATAGAGCATAGAAGAATCCACACTGGAGACAGGCCCTACAGATGTGAAGAATGTGGGAAAACTTTCCGATGGAGGACTGTTCTTATTCGACACAAGGTGGTACACACTGGAGAGAAACCATATAAATGTAATGAATGTGGCAGGGCTTTTGGCCAGTGGTCAGCGCTTAACCAACATCAGAGACTTCACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052959-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.388 C2=0.322
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=69.6)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=8.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACATGCACAGCAAGGAG
R:
CATTCCTTCCCAGAGGCCTTG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]