HsaEX0074551 @ hg19
Exon Skipping
Gene
ENSG00000158691 | ZSCAN12
Description
zinc finger and SCAN domain containing 12 [Source:HGNC Symbol;Acc:13172]
Coordinates
chr6:28346732-28367511:-
Coord C1 exon
chr6:28367434-28367511
Coord A exon
chr6:28360679-28360823
Coord C2 exon
chr6:28346732-28350386
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTACATCTCATTTTCCTCAGGTC
3' ss Score
8.8
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCTGGCCCTGGGGGCCGCAG
Seq A exon
GTCTCAGTCCACACTGGGGAACAGGAAATGTTCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCAAAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAG
Seq C2 exon
GAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTCTCATTCCAGAATGGCAATCTTGTTTCAGGAGAGATCTCTAATAGTGACTGATGGTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAAACTTTAAATTGCTACTCTCTGGAGATAGCTACCTGGACTTTACAGAGCTGTCAGAAGACTTGGGAAGGTTTGCCAGCATTGGAAAAAGCCACTTGGACTTCACAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAGTAGTTCCTGAGACCAGAAATACATATTATGAAGCAGGTGCTGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGCAGATATAGGTAAGATAATATCATCCAGAATGTGGAGACGAGGCAATCGATGATGCTGGAAAAGTTGAAGAGAGAGTTTGAATGAAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158691_MULTIEX1-2/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.959 C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGGTTCGAGGCCTCTTG
R:
CCTGTGATTTCTTTGCCAGCC
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)