BtaEX6098759 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000003575 | ZKSCAN4

Description

zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]

Coordinates

chr23:30186451-30190571:-

Coord C1 exon

chr23:30190489-30190571

Coord A exon

chr23:30188572-30188695

Coord C2 exon

chr23:30186451-30187310

Length

124 bp

Sequences

Splice sites

3' ss Seq

AACTAACTCTATTGTTTTAGGGG

3' ss Score

7.06

5' ss Seq

TGGGTAAGA

5' ss Score

8.91

Exon sequences

Seq C1 exon

TTCTCCAGGTTCCAAGGCTTGCCCCTGGGGGGCGCTGCAGAGAAGATGCCGTGATAGCCACCAGGTTCGCCCCAGGGTCCCAG

Seq A exon

GGGCCATTTAAAATGGAAGATGTGGCACTGACTGTTTCCCCTGGATGGACACAGCTGGATTCATCTCAGGTGAACTTGTATGGAGATAAAAGGCAAGAGAACCATGGCAGCCTGACCTCCTTGG

Seq C2 exon

GTGGTGTGGTGCAACCGAAGATCAGAGAGCTGCCTCCAGATGAGGATCATCCAACACAGGAGCCCGGGCAGATACCATGCCACCTGGGTAAAGCCACTGGCCAGATTCCTGCTTGTGCAGAAGCTGGTGAACAGGAGGGCAGGTTACAAAGAAAGAAAACTGCCGCAGGAAACAGGCGGCACTATTGCCATGAATGTGGAAAGACTTTTGCTCAGAGTTCAGGCCTGACTAAGCACAGGAGAATCCACACTGGGGAGAAACCCTATGAATGTGAGGACTGTGGCAAGACCTTCATTGGAAGCTCTGCTCTCGTCATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAATGTGAAGAATGTGGCAAGGTCTTCAGTCACAGTTCAAACCTTATCAAACACCAGAGAACTCACACTGGGGAGAAGCCCTACGAGTGTGATGACTGTGGGAAAACATTTAGCCAGAGCTGCAGCCTCCTTGAACATCACAAAATCCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000003575-'2-5,'2-3,4-5=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.179 A=0.690 C2=0.353

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.2)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.1),PF0013017=C1_1=WD(100=20.6),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1)

Main Inclusion Isoform:

ENSBTAP00000004651