MmuEX6057533 @ mm10
Exon Skipping
Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21387013-21394581:-
Coord C1 exon
chr13:21394517-21394581
Coord A exon
chr13:21393962-21394085
Coord C2 exon
chr13:21387013-21388706
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTGGAATTTTACTCTTTTAGGGG
3' ss Score
6.61
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TCACTCATGTGGGGCACTGTGGAGAAGATGGAGTGACAGCTACTAGGCTCACATCGGAATTACAG
Seq A exon
GGGTTGCTGAAAATGGAAGATGTAGCCCCAGTCCTTTCCCCCAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGGAATGCAGGAGCACTCTGGCAGCCTGGTTTCCCTGG
Seq C2 exon
ATCAGGACATGCAGACTAAGGTTAGGGACTTGCCTCGAGCTGAAGAATACAGGGACCAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCCGATTCCTACAGGTGCAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGGCAGCACAGAAGAGTGCCACAGGAACCAGGCGGTTCTATTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATTGAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGAAGCTCAGCTCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAACACCAGAGAACCCACACTGGGGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327-'17-12,'17-9,19-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=0.537 C2=0.206
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PU(95.0=90.5)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6),PF0013017=C1_1=WD(100=18.8),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=17.2),PF134651=zf-H2C2_2=WD(100=8.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACTAGGCTCACATCGGA
R:
GCCTGAACTCTGAGCAAAGCT
Band lengths:
255-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types