HsaEX0072829 @ hg19

Exon Skipping

Gene

ENSG00000189298 | ZKSCAN3

Description

zinc finger with KRAB and SCAN domains 3 [Source:HGNC Symbol;Acc:13853]

Coordinates

chr6:28331080-28334523:+

Coord C1 exon

chr6:28331080-28331162

Coord A exon

chr6:28331469-28331592

Coord C2 exon

chr6:28333203-28334523

Length

124 bp

Sequences

Splice sites

3' ss Seq

GGGATTACCTATTGTTTTAGGGG

3' ss Score

6.06

5' ss Seq

TGGGTAAGA

5' ss Score

8.91

Exon sequences

Seq C1 exon

TTCTCCAGGTCCCCGTGCTTGCCCATGGAGGATGCTGCAGAGAAGATAAAGTGGTAGCTTCTAGGCTTACTCCAGAGTCCCAG

Seq A exon

GGGTTGTTGAAAGTGGAAGATGTGGCCCTGACCCTCACCCCTGAATGGACACAGCAGGATTCATCTCAGGGGAATCTCTGTAGAGATGAAAAGCAGGAGAACCATGGCAGCCTGGTCTCCCTGG

Seq C2 exon

GTGATGAAAAACAGACTAAGAGCAGGGACTTGCCTCCAGCTGAGGAGCTTCCAGAAAAGGAGCATGGGAAGATATCGTGCCACCTGAGAGAAGACATTGCCCAGATTCCTACATGTGCAGAAGCTGGTGAACAGGAGGGCAGGCTACAAAGAAAGCAGAAAAATGCCACAGGAGGGAGGCGGCACATCTGCCATGAATGTGGAAAGAGTTTTGCTCAAAGCTCAGGCCTGAGTAAACACAGGAGAATCCACACTGGTGAGAAACCCTACGAATGTGAAGAGTGTGGCAAAGCCTTCATTGGGAGCTCTGCCCTTGTCATTCATCAGAGAGTCCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCATAGCTCAGACCTTATCAAGCATCAGAGAACCCACACTGGGGAGAAGCCCTATGAGTGTGATGACTGTGGGAAGACCTTCAGCCAGAGCTGCAGCCTCCTTGAACATCACAGAATC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000189298_MULTIEX1-5/5=4-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show structural model

Features

Disorder rate (Iupred):

C1=0.071 A=0.643 C2=0.332

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.2)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.1),PF0013017=C1_1=WD(100=20.2),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=18.1),PF134651=zf-H2C2_2=WD(100=9.1)

Main Inclusion Isoform:

ENSP00000252211