MmuEX6057533 @ mm9

Exon Skipping

Gene

ENSMUSG00000021327 | Zkscan3

Description

zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]

Coordinates

chr13:21478874-21486450:-

Coord C1 exon

chr13:21486386-21486450

Coord A exon

chr13:21485831-21485954

Coord C2 exon

chr13:21478874-21480575

Length

124 bp

Sequences

Splice sites

3' ss Seq

GTGGAATTTTACTCTTTTAGGGG

3' ss Score

6.61

5' ss Seq

TGGGTAAGA

5' ss Score

8.91

Exon sequences

Seq C1 exon

TCACTCATGTGGGGCACTGTGGAGAAGATGGAGTGACAGCTACTAGGCTCACATCGGAATTACAG

Seq A exon

GGGTTGCTGAAAATGGAAGATGTAGCCCCAGTCCTTTCCCCCAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGGAATGCAGGAGCACTCTGGCAGCCTGGTTTCCCTGG

Seq C2 exon

ATCAGGACATGCAGACTAAGGTTAGGGACTTGCCTCGAGCTGAAGAATATAGGGACCAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCCGATTCCTACAGGTGCAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGGCAGCACAGAAGAGTGCCACAGGAACCAGGCGGTTCTATTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATTGAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGAAGCTCAGCTCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAACACCAGAGAACCCACACTGGGGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGAATT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000021327-'10-13,'10-9,11-13=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.540 A=0.544 C2=0.206

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=PU(95.0=90.5)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6),PF0013017=C1_1=WD(100=18.8),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=17.2),PF134651=zf-H2C2_2=WD(100=8.6)

Main Inclusion Isoform:

ENSMUSP00000068424