RnoEX0101935 @ rn6

Exon Skipping

Gene

ENSRNOG00000055000 | Zkscan3

Description

zinc finger with KRAB and SCAN domains 3 [Source:RGD Symbol;Acc:1305753]

Coordinates

chr17:45256017-45263418:+

Coord C1 exon

chr17:45256017-45256084

Coord A exon

chr17:45256504-45256627

Coord C2 exon

chr17:45261696-45263418

Length

124 bp

Sequences

Splice sites

3' ss Seq

GTGGAATTTTATTCTTTTAGGGG

3' ss Score

6.13

5' ss Seq

TGGGTAAGA

5' ss Score

8.91

Exon sequences

Seq C1 exon

TAGTCACCCAGGCAGGGCATTGTGGAGAAGATGGAGTGACAGCTACCAGGCTCACATCAGAGCTGCAG

Seq A exon

GGGCTGCTGAAAATGGAAGATGTAGCCCCAGGCCTTTCCCCGAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGAAATGCAGGAGAACTCTGGCAGCCTGGTTTCCCTGG

Seq C2 exon

ATGAGAACATGCAAACTAAGGTTAGGGACTTGCCTCCAGCTGAAGAAAACACAGAACAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCAGATTCCTACAGGTACAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGACAACACAGAAGAATGCCACGGGAAACAGGCGGTTCTACTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATTGAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGGAGCTCAGCTCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAGCACCAGAGAACCCACACTGGAGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGAATT

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000055000_MULTIEX2-2/2=1-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.934 A=1.000 C2=0.255

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.2)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6),PF0013017=C1_1=WD(100=18.8),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=17.2),PF134651=zf-H2C2_2=WD(100=8.6)

Main Inclusion Isoform:

ENSRNOP00000072953