RnoINT0169028 @ rn6
Intron Retention
Gene
ENSRNOG00000055000 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:RGD Symbol;Acc:1305753]
Coordinates
chr17:45256504-45263418:+
Coord C1 exon
chr17:45256504-45256627
Coord A exon
chr17:45256628-45261695
Coord C2 exon
chr17:45261696-45263418
Length
5068 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GTTGGCATTTGTGTTTTCAGATG
3' ss Score
8.71
Exon sequences
Seq C1 exon
GGGCTGCTGAAAATGGAAGATGTAGCCCCAGGCCTTTCCCCGAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGAAATGCAGGAGAACTCTGGCAGCCTGGTTTCCCTGG
Seq A exon
GTAAGACTGATGGGTACTAATTTCTTCTCAGGCTTCTTGCTATGTTTTATATAATAGAACCCACTTCCCCTGTTAGGCTGTTAGAAGCTGTTGGGTTCATTATGTTTGAAATTATAAACACACTTTGAAACATTGTTATTGACTAGCTCCTTACTGCTTGTAATTGTGGTTCTTTGTCTCTGTCTTAGTTAGGGTTTCTATTGCTATGACAAAACACTATAACCCGAGCAACTTGGAGAAGAAAGGGTTTGTTTCAACTTAACAGTTCCATATCATAGTCCACCATCAAAGGAAGTCAAGACGGAGCTCAAAGCAGGAGCCTAGAGGTAGAAACAAGCTACAGAAGAGTACTGCATACTGGCTTGCTCCTGATAGCCTAATCACTTTGTTTTCTTGTGTACTCCAGAGACACCTGCTCAGGACTGGCTTTGCCACAATGAGCTAGGTCTTCCCACATTGACTGTTAATCAAGGAAATGGCCCCACAAATTTGCCTACAGGCCTGTCTAATAGAGGAATCTTCTCATTTAAGGTTCCTTCCCAGAAGAGTCTAGGTTTGTGTCAAGTTGACAAGAACCAGTAGCACACACTCCGAGTGTTGTAGTGACAGTGAACAGGATAAAGCACAGAGTCTCCTGTATTGTTCTGGCTCAGAGGAAATACCAGGGAATACTGAGAGTGCATATGTTGAGGGTGCATATCTCACAGGGACAGCACACTTGCTGAGCATGCATGAAATTATGGTTTCAATGAACTGCAAGAAAAATTTTCTCCTTTCCCTTCGCGTTCCTATCCATGACTAGTAAAAAGACTGAGGAGCCTATCCACAAGAAATGGGTTGTTGAATCACAGTGTGAGAGTTAGAAGCAACATTAGACACCAGCTATAGGCCCTGACCCTAAAGGCAAGGCCACAGAAGGTTATCAGACTTGTCAAATGTCACATGCTTGGTAGCATGTGAGGGCCTCCAGTTTTTCTCAGAGAACTGATCTGTTCTGGTGTACCTGCCACTGCCAGGGCACAGTTTACCATAACTACCTTTGTCTTTGTCTTAGTTAGAGTTTCTGTTGCTGCAACAAAACACCATGACCAAAAAGCAAGTTAGGAAGAAAGGGTCTATTTAGCTTACACATCTACATTGCTGTTCATCACTGAAGGAAGTCAGGACAGGAACTCAAACAGAGCAAGATACTGGAGGCAAGAACTTGTGCAGAAGCTATGGAGAGGTGGGGATCAGGGAGTCCTGCTTACTGGCTTGCTTTCCACGGCTTATCTCAGCCTGCTTTCTTATAGAACTCAGGACCACCAGCCCAGGGATGGCACGACTCACAGTAGGCTAGGCAATTCCCCAGCAATCACAAATTGGGAAAATGACTTACAGCTGGATCTCATGGAGGCATCTCCTCAACTGAGGCTCCTTTCTCTCTGATGACACACAAACACATCCTTATTGAGCTCCAGCCTTTCCTTTCTGATTCATTCCCAAGATATAACATTAAAATCATTGTCTTGGTTAGGGTTTTACTGCCGTGAGCAGACCCATGACCAAGGACAACATTTAATTGGGGCTGGCTTACAGCTTTGTTAGTTGAGGCCATTATCATCAAGATGGGAGCATGTCAGTATCCAGGAAGACATGGTGCAGGAGAAGCTGAGAGTTCTACCTCGTCATCTGAAGACCGCTCCTACATGGTTAGGAGGAGGGTCTCAAAGCCTACACCCACAGACATACTTCCTCCCAAAAGGCCACATCTGTTCCAACAAGGCTACACCTCCAAAAAGTGCCACTCCCTGGGCCAAGCATATTTAAACCTCCACTTGCATGAATAACTTTAAAAATCCCAGTTTTTTAAAATCCAAGCACATTAAACTAAAAGTCCAGAGGACTAGAGAGATGGCTCAGCAGTTAAGAGCACTGGCTGCTTTTCCAGAGGTCCTTGATTCAATTTTCAGTAACCACATGTTGGCTTACAACCATCTGTAATGTGATCTGATGCCCTCTTCTGGAATGGAGGTGTACATGCAGATACATGTACATAAATACATTTTAAAAAATAAAATTAAAAGTCCAAAGTCTTTCAGCTGTGGGCACCAATAAAAATCAAAATTAAATTAAATACTTCCAAGAGGGAAGAATCAGGGCACTGAAACCATTTGCACCAAGCAAAACCAAACCAACATTATAAATAACTCAACATCCAATTATCTGGGATTCACTCCAAAGGGATCCCAGAGTCACTTCTCTGGTTCTGCCCTCTGCATCACACACATCTTCTAGACTCTTGCTGTCTCCATTCCACTGCTGCTGCTTTCTTGGTGATTATCCCATGGTATTGACATCTCCAAAATGCTAGACTCTTCTGTTGCAATTAGGCTGCACTTTTACAAATAGCCTCTCATAGGCTCTCTTCATGGTGCCAAGCTTCAAATTCTTTGCATGACCCCTTCAGTCCTGGGCCTTCATTGCTACCAAGTCTGCACCTTCACCAATGGCCTCTCACAATGTCAGCTATTCTCCATGACCCCTTCATGCCTTCAAAACCAGTACCACCTGAATGACTTACATATTACCATGTCTAGCTGCTAGCAATATGTACAACCTCGACCACCTCTGGAACATACCTTCTAAGTGCTAATTCTCAGAAAACACTTCCCAGAAGATTTCACCGCAGTGATGCTGGCCTATCCTTAATCACTGCTAATTTCTTACCTACAGCTAACCAGCATCAACTGTCCCAGTAAAACAAAGGTTTCACTTCAGTGGTGCTGGTCTCTTGTTAATTGTGGCTGACTCTTAAACCCCAGCTGACCAGATTGACAGACTCTTAATTCAAAATGCCCATCACACTGAGCTCTCAACACTCAATGGCTTTTCTAACTCAAAATTCTTCCATAATCCTCCCAAAAACATGGTTAGGTCTGTCACAACAGTACCCCATAAACCTACTACCAACTTATCTTAGGGTTTCTATTGCTGCAATGAAACACGATGACCAAAAAGCAAGTTGGGAAGGAAAGGGTTTACTCAGCCTACAATTTCACATTACTGTTCATCACCAAAGTAAGTTAGGACAGGAACTTAAACAGTTTAAGATTCTGAAGGCAAGAGCTGATACAGAAGCCATGGACAAATGCTGCTTACTCAGGCTTGCTTCCCTTGGCTTGCTCAGCTTGCTCAGCCTACTTTCTTATAGAATCCAGGGATAGAAACACCCACCATGGGATAGGCCCTCCTCAAGTGATCACTAATTGAGCAAATGTCATATAGCTGGATCACCTGGAGGCATTTCCTTTACTAAGGCTGTTTCCTCTGATGACTCTAGCTTGTGTCAAGTTGCCACAAAACCAACTAGTACAGTCTTTATCACAAATAGATGTGAACACTGCAGAAATCCTTTCACTTGTCCTGTTTTCTGTTTCTTCCTCTGTTCAGTCCTTCTCACATTTGTTCTAGTTTGTTTTCTATTGATGTAATAAATACTGTATGACCCAAATACTATGACTCTTTGAGGGAGTAAAGGGTTCATTTTTATCCCACAGTCTTTCATTGAGGGAAGTCGGAGCAAGACAACTCAAACAGGAAGCTGAGGGCAGGGACTGAGGCAGAGACCATTGAGAAATGCTGCTAACTGGCTTACTCCCTTACTTTCTTCTACAATCAGGACTACCTGCCTAGGAATGGCACCACTGATAATATACTGGGCTCTCCCGCATCAGTTATTAGACAAGAAAATACCCCATAGACTTGCCACAGACCAATCAGATGGAGGTGGTTCCTCAATTAAAATACCCTTATAAAACTAAGTGTCAAATTGACAAAAAAGCAACCAACACAAGTTAGTTGAATCCTGGTCAAATATTATCCATTATTAAACCATAACCTTTCCTTTCCTTGTTTATACCCAACACTTATGTAATAATTCTAATATAAAACAGTATAATTAAAAAAAAAAAACATCCACACTTTTAAAATTCAGAATCTTTTTAGATTTGGTTCTTGTGAAATAAGAACAAGTCAAGGACTAGAGAGATGGGCTCAGAGAGGTCAAAAACACTGGCGCACTTACAGAGGTCCTGAGTTCAATTCCCAGCAACCACAGGCGCTTATTAACCCATCTGTGGGATGAAGTCTGGTGCGCCCTCTTCTGGCCAGCAGGCATACCATGCAAGCAGAATACTTATACATAATAAATAAATCTTATAAATAAATAAATCTTTCTTTTTGTTTGTTTTGGTTTTTTTTGTTGTGTTTTGGGTTTTTTTCCTTTTCTTTTTCTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTCATAATAAATAAATCTTTAAGGAGCTGGAGAGATGTCTCAGTGGTTAAGAGCTCTGACTACTCTTCCACAGGTACTGAGTTCAATTACATGGTGGCTCACAAACATCTGTAATGGGATCCAACACACTCTTCTGGTGTGTGTCTGAAGATAGCTACTGTGTACTCATATAAATAAAAACAGATAAATCCTAAAGAACAAGTCAAATGATTTTCTCCAACAGGAAAGCACCAGGGCATAAAAACAATCACATTTAGGCAAAGCCAAAGTCTAGCAGTATAGCTTCAAATCTTGTAGATCAGCATTCAAGATCTGTGATTCACTAATGAAGTTCTGGCCTCCAAAGGGCTTAGCTCTATTTCTCTCCAGCAGAGAAAGTGAAGTATTTAACCTTGGGTACATGTCTTTGTCTTTGTATTATTACACCTTTGGGGTCCCCTACAACCACCACTGTGTATACACAGGAATCCTTAGTTCTCACCACTTTCTCTCACTCCCACTATTCCTGGTTATGCCCTTCTTCCAACAACCCCATTTTTGCTTCCATACCTCTGTAGCTATTCTGTTATCCTCATTTTTCTCCCATTCTAATATCTGCACTTAAAAGCCTAACCTTGCTGAACATACAGACCTTTGTAATTATTTTCTCTATGATATTCATCACAGTGCTCCTATGCAAAGCATAATTAACAATTGTTGGCATTTGTGTTTTCAG
Seq C2 exon
ATGAGAACATGCAAACTAAGGTTAGGGACTTGCCTCCAGCTGAAGAAAACACAGAACAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCAGATTCCTACAGGTACAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGACAACACAGAAGAATGCCACGGGAAACAGGCGGTTCTACTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATTGAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGGAGCTCAGCTCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAGCACCAGAGAACCCACACTGGAGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGAATTCACACTGGGGAGAAGCCATACCAGTGCAACATGTGTCCCAAAGCCTTTAGGCGTAGCTCACATCTCCTGAGACATCAGAGGACCCACACTGGGGATAAAGATTTTTTTGTTCCAGAACCTTACTGGGAAAGTCAGAGTAGGGTGGAAAGCCATTGGGAAAATATTGAGACTCCTGTGTCTTATCAATGCAATGATTGTGAGAGAAGTTTCAGTAGGATTACAAGCCTTATTGAACACCAAAAAGTACACACTGGTGAGAAGCCCTTTGAATGCCAGACCTGTGGAAAAGGCTTCACCCGACCTTCATACCTTATTCAACATCAGAGAAGACACACGGGGAAGAAAACTTCTGTCACAGTGACCCCTGCTGTACATTCCGAAGTTGGTGTTCAACTGTCATTGAACTGAAGCCGCTCTGGAGCTCTTAATGACTGCAGAAGTCATAGGCTAGGGCTCTATTTAATAATGTACATCCTCAGATATTAGGAATCTGACTAAGACTTATTATCTTCTACATTCTAGAAGGTGACTATAAAAAAAAACTTATTTCATAGGAGAGTTGTCTGCAAGAGTTCTAACCTATTGGAATTAAATGGGCTTCCTGACTGTCAAATTGCCTTCCCTTGGCCTGCACTTCCTGTCTCTTGAGGGAAAGGTTATGCTTTTTTTGGGAGGGGTGGGGGTGGGGGAAGTTACTCTGACCCTTCTTTAGGCTAATGAGCCCTTCACGTGTGGTCAGACTTGGAACTCTTATGTCCTGCTTTGTGCCTTGTATACAGGTGCTAANAAACAAACATTTATTAAATATACTGGTGAGATTTCCTACATAGCTCTGAAAACCCATTATCTGGAAATTCTCACCAAGGCCATTTGTATATCTTTGAAAAAAAAAGATAATGTTTTAGATTGAATCAATGTAGTACTGCTTTGTTTTTGTTTTTTGCCAAGTACCCCAACTTGGCAGGGAAGAGGTGAAGGTGAGGTTATTGTGCTAGAATTCTTTAACTCTTTACCTAATTTAGGAATTCTGTGAGAGTGCCTTAAATAGCTTTCTTAGCATTAAGTCATTGTGAATGTGCCACCCATGGAATTCCACTAATATTTTTTTCCTGTTAATTTTGTTACTCTTGAGAGAACAGAAAAGAAAAGAAAAAGTTAAAAAAAAAAAACTTTCCTACTCATGTAGTGTGAAAATCAGTTTCAGAATAAAGTGATCAATGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055000:ENSRNOT00000080655:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.255
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6),PF0013017=C1_1=WD(100=18.8),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=17.2),PF134651=zf-H2C2_2=WD(100=8.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]