MmuINT1035853 @ mm10
Intron Retention
Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21387013-21394085:-
Coord C1 exon
chr13:21393962-21394085
Coord A exon
chr13:21388707-21393961
Coord C2 exon
chr13:21387013-21388706
Length
5255 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TATTGGCATTTGTGTTTCAGATC
3' ss Score
9.34
Exon sequences
Seq C1 exon
GGGTTGCTGAAAATGGAAGATGTAGCCCCAGTCCTTTCCCCCAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGGAATGCAGGAGCACTCTGGCAGCCTGGTTTCCCTGG
Seq A exon
GTAAGACTGATGAGTACTAATTTCTAATCAGGCTTCTTGCTATCTTTTACATAGTAGAACCTACTTCCCCATGAGGCTGTTGGAAGCTGTTGGGTTCATTATGTTTGAAACACTGTTATTGACAGCTCCTTCCTGCTTATAACTGGTTCTTTATCCTTTGTCTTAGTTAGGGTTTCTATTGCTATGACAAAACACTATAACCAAAAGCAACTTGGAGAAGAAAGGATTTATTTCAACTTACAGTTCCACACCATAGTCTACCATCAAAGGAAGTCAAGACAGGAACTCAAAGCAGGAGCCTGGAGGTAGAAACAAAAACTACAGAAGAGTACTGCTTACTGGCTTGCTCCTCATGGCCTAATCAGTCTGTTTTCTTGTGTACTTCAGGGACACTTGCTCAGGACTGGCACTGCCACAATGAGCTAGGTCTTCCCACATTGACAGTTAATCGAGGAAATGTCCCCACAAACTTGCCTACAGGCCAGTCTAATAGAGGAATCTTCTCAATTAAGATTCCTTCTTCCCAGGTAAGTCTAGGTTTTTGTCAAGTTGACAAGAACCAGTAGCATACACAGTGTTGCAGTGACAGCGAATGGGATAAAGCATAGAATCCCCTGTACTGTTCTGGCTGAGAGGAGATGCTCAGGGAATACTGAGTGCTGAAGGTGCACATCTCACAGGGACAGCACTCTTGCTGAGCATGCATGAAATCATGGCTTCAATGAACTGCAAAAAAAAAAGATCTTTTCCTTTCCCTTCCTGTTCCTATCCATGACTAGTAAAAAGACTGAGGAGCCTCTCCACAAGACATGGGTTATGGAATCAGGGTTAGAAGCAACATTAGACACCAGCCATAGGCCCTAACACTAAAGCAAGGACACAAAAGGTTACAAGATTTGTCAAATGTCACATGCTTGGTAGCATGGTAGGGCCTTCAGTTTTTCTCAGAGAATTGATGATCTCTTCTGGTGTGCCTGCCACTGCCAAGTCACAGTTTACCAGAACTACTTTTGTCTTTGTCCCAGTTGAGTTTCTATTCCTGCGACAAAACACCATGACCAAAAAGCACGTTAGGAGGGAAGGGTCGAATCAGCTTACATATCTACATTGCTGTTCATCACTGGAGGAAGTCAGGACAGGAACTCAAATAGAGCAAGACCCTGGAGGCAGGAACTGGCACAGAAGCCATGGAGGGTGGGCGTCAGGGGATCCTGCTTACTGACTTGCTTTCCATGGCTTACTCAGCCTGCTTTCTTATAGAACTCAGCCTGCCAGCCCAGGGATGGCACCACCCACAATGGGCTGGGCAGTCCCCCAACAATCACAAATTGGGAAAATGCCTTATAGCTGGATCTCATGGAGGCATTTCCTCAACTTAGGCTTCTTCCTCTCTGATGACACACAAACATATCACTATTAAGCTACAACCCTTCCTTTCTTATTCATTCCCAAGATATAACATTAAAATCTTTGTCTTGGTTAGGGTTTTACTGCTTTGAACAGACACCATGACCAAAGCAACTCTAATAAGGACAACATTAATTGGGGCTGGCTTACAGCTTCAGAGGTTCAGTCCATTAACATCAAGGTGGGAGCATGGCAGCATCCAGTCATGGTGCAGGAAAAGCTGAGAGTTTTACCTTGTCATCTGAAGGCTGCTAGGAGAAGACTGGCTCCCACAAGGTTAGAAGGAGATCTCAAAGCTCACACCCACAGTGACATACTTTCTCCCAAAAGGCCACATCTACTCCAACAAGGCCACACCTCCAAATAGTGCCATTCCTGGACAAACCATATCTAAACCTCCACACTCATGAATAACTTTAAAAATTGCAGTCTTTACATATTCAAACACATTAAATTAAAAGTCCAGGGGACTAGAGAGATAGATGGCTCAGCAGTTAAGACCACTGACAGCTTTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGCCTCACAACCATCTATAATGGGATCTGATGCCCTTTTCTGGAATGAAGCTGTACATGCAGGTAGACCACTCATATACATAAATAAATCTTTAAAAAATAAAATTAAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCTTGGTCTACAAAGTGAGTGCCAGGACAGCCAGAGCTACACACAGAGAAACCCTGTCTCGAAAAACCAAAAATAAAAAATAAAAAATAAAATTAAAAGTCCAAAGTCTTAGATGTGAGCACCAATAAAAAATCAAAATTAAATGAAATTCCTCCAAGCGGGAAGACAGGGGACAGAAACCATTTGCACCAGGCAAAACCAAACCAGCAGTATAAATAACTCAACATCCAATTATCTGGGATTTACTCAGTCTTCTGGGATCCTCCAGAAGGGCTTGAATCAGTTCTGTGGTTCTACCCTTTGCATCACTCACAACTTATCTTCTAGGCTCTAGCTGGCTCCATTCTACTGCTGCTGCTTTCTTGGTGATCATTCCATGGTACTGACATCTCCAAAATGTTCTTCTGTTGCAACTAGGCTGCACCTTCTCAAATAGCCTCTCATAGACTCTCTTCATGGTGCCAAGCTTCAAATTCTTTGCATGATCCCCTGGACCTTCAATTGCTACCAAGGCTGCACCTTCACCAATGGCCTGTCCTGGCCTCTCACAGTGCCGAGCCTCAGCTGTTCTCCATGACCCCTTCATGCCTTCAAAACCAGTACCACCTGGGTGACCCTTACACATTACCAAGTCCCGCTGCTAGCAATAAATACAACCTTAACCACCTCTGGAACATACCTTCTAAGTGCTGATTCTTAGAAAACACTTCCCAGAAGATGTCACCTCAGTGATGCTGGTCTCTTCTTAACCACTGCTAATTTCTCAGCTTCAGCTAACCAGCATCAATTGTCCCAGGAAAGCAAAGGTTTCACTTCAGTCGTGCTGGTCTCCTTTTAATTGTGGCTGACTCTTAAACCCCATCTGACCAGAATGGCAGAATCTTAATTCAAAATAACAAAATGGCCTATCACACTGAGCTCTCAACACTCAGTGGCTTTTCTAACTCAAAATTCTTCCACAATCCTCCCAAAAACATGGTCAGGTCTGTCAGAGCAATACCCCAAATCCTACTACCAATTTGCCTTATTTTCTTTCTATTGCTGCAATAAAACGCCATGACCAAAAAGCAAGTTGGGGAGGAAAGGGTTTACTCATCTTACAGTTCCACATTGCTGTTCATCACTGAAGGAAGTCAGGACAGGAACTCAAACAGCATAAGATCCTGGAGGCAAGAGCTGATACAGAAGCCATGGACAAAAGTAGCTTACTCAGGCTTGCTTCCCCTGGCTTGCTCAGCTGGCTCAGCCTACGTTCTTATAGAACCCAGGACTGACAGTCCAGGGATAGAACCACCCACAGTGGGCTGGGCCCTCCCCAATTGATCACTAATTGAGAAAATGTCATATAGCTGGATCTCCTAGAGTCATTTCCTTAACTGAGGCTGTTTCCTCTCATGACTTTAGCTGTGTCAAGTTGCCACAAAACCAACCAATACAATCTTTATCACAAACAGATGTGAACACTGCAGAATTCCTTTCAGAATTGCCCTGTTTTCTGTTGCTTCCTGTGTTCGGTCTTTCTTACATCTGTTCTAGTTTCTTTTCTGTTGCTGTAATAAATACTATATGACCCAAATGCTATGACTGCTTGAGGGAGTAAAGGGTTTATTTTTATCCCATAGTCTTTGATTGAAGGAAGTCCTTGCATGAACTCATACAGGAACCTGAGGGCACAGACTGAAGCAGAGGCCACTGAGAAATGCTAACTGGCCTGCTCCACTGTGGGGTGGGGTGCTTTCAGACCCTTATCCTAGCTCCCTGGAAGCCAGTATTCTGCTAGCAGCCTTCAGATGAACATGTAGAACTCTCAGCTCCTCCTACACCATGCCTGCCTGAATGCTGCCATGTTCCTGACTTGATAATGGACTGAACCTCTGAACCTGTAAGACAGCCCCAATTAAATGTTGTCCTTATAGGAGCTGCCTTGGTCCTTCGTGCCTCAGTAGCTCTTCTGCCTTGGTGTCTGTTCACAGCAGTAAAACCCTAAGACACTACCTGACTTTCTTCTACAATCAGGACTACCTGACCAGGGATGGCACCACTGATAATATGCTGGGTCCTCCCACATCAGTGATTAAACAAGAAAATGCCCCCCACAGACTTGCCACAGACCTACCAAATGGAAGAGATTCCTCAGTTGAGATACCCTTATAGTTTGTGTCAAATTGACAAAAAGTCACTAGCATAATTTAGTTGACTCTTGTCAAATACATCCATTATTAAACCATAACCTTTCCTTTCTTGTTTATACCCAAGGCCTTATGTTAATACTCCAACCTAAAACAGCATAATTTTATAAACGTCAAAGTCTTTTAAAAAAAAAACTCAACATTTTAAAATTTAGAATCTCTTTAACTTTTGGTTCCTGTGCAGTTAAGACCAAGTCAAGGGCTAGAGAGATGGTTCAGAAGTCAAGCACACTGGCTCTTCTTATAAAGGTCCTGACTTCAATTCCCAGCAACCAAACGGTGGCTTATAACCATCTGTAATGAGGTCTGGTGTTCTCTTCTTCCCGGCAGGCATATGTGCAGGCAGAACACTGTACACATAATTAATAAATAAATCTTTAAAAAAAAAAAAAAGAACAAGTCAAAAGATTTACTCCAAAAGGAAAGCACTGGGGCATAAAACCAATCACATTTAAGCAAAGCCAAAATCCAGCAGTATAGCTTCAAATCTTGTAATTCAGTATTCAAGATCTATGACTCGCTAATGACATTCTGGCCTCTGAAGGGCTTAGCTCTTTTTCTTTCCAGAAGAGAAAGTGAAGTATTTAATCTTAGGTACATGTCTTTGCTGCCTTCCTATTATTACACCTTCAGGGTTCCCCTACAACCTCACTGTGTATCCACAGGAATCCTTAGTTCTCACCAACCACTTTCTCTCCACTCCCATTATTCCTGGTTATGTCCTTCTTTCAACAACCCCATTTCTGCCTTCATGCCTCAGTAGCTCTTCTGTTATCCTCCTTTTTGTTCCATCCTGATTTCTACACTTAAATGCTTAATAACCTTGCTGAACACATAGACCTTTATGATTATTGTCTCTATGCTATTCATCACAGTGTTCCTATGCAAAGCATAATTAACAATTATTGGCATTTGTGTTTCAG
Seq C2 exon
ATCAGGACATGCAGACTAAGGTTAGGGACTTGCCTCGAGCTGAAGAATACAGGGACCAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCCGATTCCTACAGGTGCAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGGCAGCACAGAAGAGTGCCACAGGAACCAGGCGGTTCTATTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATTGAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGAAGCTCAGCTCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAACACCAGAGAACCCACACTGGGGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGAATTCACACTGGGGAGAAGCCATACCAGTGCAACATGTGTCCCAAAGCCTTTAGGCGTAGCTCACATCTTCTGAGACATCAGAGGACCCATACTGGGGATAAAGATTTTTTTGTTCCAGAACCTTACTGGGAAAGTCAGAGTAGGGTGGAAAGCCATTGGGAAAATATTGAAACTCCTGTGTCTTATCAATGTAATGATTGTGAGAGAAGTTTCAGTAGGATTACAAGCCTTATTGAACACCAAAAAGTACACACTGGTGAGAAGCCCTTTGAGTGCCAAACCTGTGGAAAAGGCTTCACCCGACCTTCATACCTTATTCAACATCAGAGAAGACACACGGGGAAGAAAACTTCTGTCACAGTGACCCCTGCTGTACATTCCGAAGTTGGTGTTCAACTGTCATTGAACTGAAGCCACTCTGTAGTTCTTAATGACTGCAGAAGTCATAGGCTGGGGCTCTATTTGATAATGTACATTCTCAGATATTAGGAATCTGGCTAAGACTTATCTTCTACATTCTAGAAGGTGACTAGGAAAAAAAAATTAATTTCATAGAAGAGTTGTCTACAAGAGTCCTCACCCATTGGAACTAAATGGGCTTCCTGACTGTCAAATTGCCTTCCCTTGTCCTGCACTTCATATCTCTTGAGGGAATGGTTATGCTTTGGGGGTGTTGCTCTGATCCTTCATTAGGCTATTGGGCCCTTCACATGTGGTCAGACTTGGAACTCTTATGTCCTGCTTTGTGCCTTGTATACAGGTGCTAATAGACATTTATTAAATATACTGGTGAGATTTCCTACATAGCTCTAAAAACCCATTATCTGGAAATTCTCACCAAAACCATTTGTATATCTTTTTAAAAAAAATGATGTTTTAGATTGAATCAATGTAGAACTGCTTTGTTTTTGTTTTTTGCCAAGTACCCCAACTTGGCAGGGCAGAGGTGAAGGTGAGGTTACTGTGCTAAAATCCTTTAATCCTTTACCTAATTTAGGAATTCTGTGAGAGTGCCTTAAACAGCTTTCTTAGCATTAAATCATTGTGAATGTGCCACCCATGGAATTCCACTAATATTTTTTTTCTTGTTAATTTTGTTACTCTTGAGAGAACAAAAAAAAAAAAAAAAGAAAGAAAAAAAAACCTTTCCTACTCATGTAGTGTGAAAATGAGTTTCAGAATAAAGTGATCAATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327:ENSMUST00000116434:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=NA C2=0.206
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(95.0=90.5)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6),PF0013017=C1_1=WD(100=18.8),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=17.2),PF134651=zf-H2C2_2=WD(100=8.6)
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types