BtaEX6099224 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015106 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr23:47695216-47701038:-
Coord C1 exon
chr23:47700890-47701038
Coord A exon
chr23:47698945-47699119
Coord C2 exon
chr23:47695216-47695344
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGGTTCCCCTCTCCTTTCAGGCT
3' ss Score
11.5
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAACTGAAGTATGGAGATGGAATTCAGCTGGCCCGGAGCAGAGAGCTGGACGAGTGTTTCGCCCAGGCCAACGATCAGATGGAAATTACTGATAGCTTGATCAGAGAGATGCGGCAGATGGGCCAGCCCTGTGATGCTTATCAGAAAAG
Seq A exon
GCTGCTGCAGCTGCAGGAACAGATGCGAGCCCTCTACAAAGCCATCAGCGGCCCCCGCGTCCGCAGGGCCAGCTCCAAGGGCGGCGGAGGGTACACCTGCCAGAGTGGCTCCGGGTGGGACGAATTCACCAAGCGCCTCACCAGCGAGTGTCTGGGGTGGATGAGGCAGCAGAGG
Seq C2 exon
GCGGAGATGGACATGATGACCTGGGGCGTGGACCTGGCCTCGGTGGAGCAGCACATCAGCAGCCACAGGAGCATCCACAACACCATCGGGGACTACCGCTGGCAGCTGGACAAGATCAAAGCCGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015106-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043516=Spectrin=PU(20.0=32.2)
C2:
PF0043516=Spectrin=FE(44.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGGAATTCAGCTGGCCC
R:
TTGATCTTGTCCAGCTGCCAG
Band lengths:
255-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]