GgaEX6020306 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64635481-64638815:-
Coord C1 exon
chr2:64638667-64638815
Coord A exon
chr2:64638194-64638368
Coord C2 exon
chr2:64635481-64635609
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACCGATTCCTTCCCTTTCAGGCT
3' ss Score
10.29
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAATTGAAATATGGTGATGGTGTCCAGATTAGAGGAAACAGAGATCTGGAAGAATGTTTTGCGCAGGCAAATGACCAAATGGACATCCTGGATGGGCTGATCCGAGAGCTAAGGCAGATGAATCAGCCCTGTGAAATGTATCAGAAAAG
Seq A exon
GCTGCTCCAACTTCAAGAGCAAATGCGAGCTCTGTACAAAGCCATTAGTGTTCCCCGTGCCAGGAGGGCCAGCTCCAAAGGTGGTGGTTGCTACTCCTCTCAGAGTGGTTCAGGCTGGGATGAGTACACAAAACGTGTGACAAGTGAATGCTTAAATTGGATGAGGCAACAGAAG
Seq C2 exon
GCTGAAATGGAGCTGGTGAAATGGGGGTTTGATGCAGCATCTATTGAGCAACAGATTAGTGACCATAGAAGAACTCACAATGCCATTGGAGACTATCGCTGGCACCTGGACAAAGTCAAAACAGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
PF0043516=Spectrin=PU(15.9=28.8)
C2:
PF0043516=Spectrin=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATGGTGTCCAGATTAGAGG
R:
TTGACTTTGTCCAGGTGCCAG
Band lengths:
256-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]