MmuEX6057991 @ mm9
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38259385-38264776:+
Coord C1 exon
chr13:38259385-38259533
Coord A exon
chr13:38260475-38260649
Coord C2 exon
chr13:38264648-38264776
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACTCTTTCCTTTCCTTTCAGACT
3' ss Score
11.23
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAACTGAAATTCGGAGAAGGGATGCAGCTGGCATGGAACCGAGAGCTGGATGAGTATTTTACACAAGCCAACGATCAGATGGAAATCATAGACGGCTTGATCCGAGAGATGAGGCAGATGGGCCAGCCCTGTGATGCGTATCAGAAAAG
Seq A exon
ACTGCTTCAGCTCCAGGAACAAATGCGAGCCCTTTACAAGGCCATCAGCGTCCCTCGGGTCCGAAGAGCCAGCTCCAAGGGAGCCGGAGGGTACACTTGCCAGAGTGGATCCGGCTGGGACGAGTTCACCAAACGCCTCACGGGCGAGTGTCTGGGCTGGATGAGGCAGCAGAGG
Seq C2 exon
GAGGAAATGGACCTGATGGCCTGGGGTGTGGACGCTGGTTCAGTGGAACAGCACATCAATAGCCACAGGAGCATCCACAACACCATTGGGGACTACCGCTGGCAGCTGGACAAGATCAAAGCAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.017 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAACCGAGAGCTGGATGA
R:
TCTGCTTTGATCTTGTCCAGCT
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: