RnoEX6053423 @ rn6
Exon Skipping
Gene
ENSRNOG00000013928 | Dsp
Description
desmoplakin [Source:RGD Symbol;Acc:1305794]
Coordinates
chr17:27312280-27317674:-
Coord C1 exon
chr17:27317526-27317674
Coord A exon
chr17:27316417-27316585
Coord C2 exon
chr17:27312280-27312408
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTCCTTTCCTTTCAGACT
3' ss Score
11.98
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAACTGAAGTTCGGAGAAGGAATCCAGCTGGCGTGGAACAGAGAACTGGATGAGTATTTCACTCAAGCCAATGATCAGATGGAAATCATAGATGGCTTGATCCGGGAGATGAGGCAGATGGGCCAGCCCTGTGATGCGTATCAGAAAAG
Seq A exon
ACTGCTTCAGCTCCAGGAACAGATGCGAGCCCTGTACAAGGCCATCAGTGCCCCTCGAGTGCGAAGGGCCAGCTCCAAGGGAGGGTACACTTGTCAGAGTGGCTCCGGGTGGGATGAATTCACCAAACGCCTGACGGGCGAGTGCCTGGGCTGGATGAGGCAGCAGAGG
Seq C2 exon
GCGGAAATGGACCTGATGGCCTGGGGTGTGGACTCTGGTTCAGTGGAGCAGCACATCAACAGCCACAGGAGTATCCACAATGCCATCGGAGACTACCGCTGGCAACTGGACAAGATCAAAGCAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013928-'3-7,'3-3,6-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCATACCGAGATTTCCTCA
R:
CTCGATTTTGTCTGACGCTGGA
Band lengths:
202-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]