RnoEX0029983 @ rn6
Exon Skipping
Gene
ENSRNOG00000013928 | Dsp
Description
desmoplakin [Source:RGD Symbol;Acc:1305794]
Coordinates
chr17:27311358-27316585:-
Coord C1 exon
chr17:27316417-27316585
Coord A exon
chr17:27312280-27312408
Coord C2 exon
chr17:27311358-27311408
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCTCTCTGACTGCAGGCG
3' ss Score
10.12
5' ss Seq
CTGGTACTT
5' ss Score
4.74
Exon sequences
Seq C1 exon
ACTGCTTCAGCTCCAGGAACAGATGCGAGCCCTGTACAAGGCCATCAGTGCCCCTCGAGTGCGAAGGGCCAGCTCCAAGGGAGGGTACACTTGTCAGAGTGGCTCCGGGTGGGATGAATTCACCAAACGCCTGACGGGCGAGTGCCTGGGCTGGATGAGGCAGCAGAGG
Seq A exon
GCGGAAATGGACCTGATGGCCTGGGGTGTGGACTCTGGTTCAGTGGAGCAGCACATCAACAGCCACAGGAGTATCCACAATGCCATCGGAGACTACCGCTGGCAACTGGACAAGATCAAAGCAGACCTG
Seq C2 exon
CGTGAGAAGTCCGCAATCTATCAATTGGAGGAGGAATATGAAAACCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013928-'6-5,'6-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCAGCTCCAGGAACAG
R:
AGCAGGTTTTCATATTCCTCCTCC
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]