MmuEX6057990 @ mm10
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38168606-38173868:+
Coord C1 exon
chr13:38168606-38168780
Coord A exon
chr13:38172779-38172907
Coord C2 exon
chr13:38173818-38173868
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCTGTCTCTCTTGCTGCAGGAG
3' ss Score
10.72
5' ss Seq
CTGGTACCT
5' ss Score
4.11
Exon sequences
Seq C1 exon
ACTGCTTCAGCTCCAGGAACAAATGCGAGCCCTTTACAAGGCCATCAGCGTCCCTCGGGTCCGAAGAGCCAGCTCCAAGGGAGCCGGAGGGTACACTTGCCAGAGTGGATCCGGCTGGGACGAGTTCACCAAACGCCTCACGGGCGAGTGTCTGGGCTGGATGAGGCAGCAGAGG
Seq A exon
GAGGAAATGGACCTGATGGCCTGGGGTGTGGACGCTGGTTCAGTGGAACAGCACATCAATAGCCACAGGAGCATCCACAACACCATTGGGGACTACCGCTGGCAGCTGGACAAGATCAAAGCAGACCTG
Seq C2 exon
CGTGAGAAGTCAGCAATCTACCAGTTGGAGGAGGAATATGAAAACCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'4-6,'4-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTTCAGCTCCAGGAACA
R:
CAGCAGGTTTTCATATTCCTCCTCC
Band lengths:
226-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types