GgaEX6020307 @ galGal3
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
NA
Coordinates
chr2:65713636-65717676:-
Coord C1 exon
chr2:65717502-65717676
Coord A exon
chr2:65714789-65714917
Coord C2 exon
chr2:65713636-65713686
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTCCCTTTTTCCTAGGCT
3' ss Score
9.09
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
GCTGCTCCAACTTCAAGAGCAAATGCGAGCTCTGTACAAAGCCATTAGTGTTCCCCGTGCCAGGAGGGCCAGCTCCAAAGGTGGTGGTTGCTACTCCTCTCAGAGTGGTTCAGGCTGGGATGAGTACACAAAACGTGTGACAAGTGAATGCTTAAATTGGATGAGGCAACAGAAG
Seq A exon
GCTGAAATGGAGCTGGTGAAATGGGGGTTTGATGCAGCATCTATTGAGCAACAGATTAGTGACCATAGAAGAACTCACAATGCCATTGGAGACTATCGCTGGCACCTGGACAAAGTCAAAACAGATCTG
Seq C2 exon
CGTGAGAAGGCTGCCGTTCACCAGCTGGAGGAAGAATACGAAGGACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAACTTCAAGAGCAAATGC
R:
GCAGTCCTTCGTATTCTTCCTCC
Band lengths:
220-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]