HsaEX6045704 @ hg38
Exon Skipping
Gene
ENSG00000096696 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr6:7559226-7563786:+
Coord C1 exon
chr6:7559226-7559400
Coord A exon
chr6:7562652-7562780
Coord C2 exon
chr6:7563736-7563786
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTCTTTGTGTCGCAGGCG
3' ss Score
10
5' ss Seq
CTGGTACTT
5' ss Score
4.74
Exon sequences
Seq C1 exon
GCTTCTTCAGCTCCAAGAGCAAATGCGAGCCCTTTATAAAGCCATCAGTGTCCCTCGAGTCCGCAGGGCCAGCTCCAAGGGTGGTGGAGGCTACACTTGTCAGAGTGGCTCTGGCTGGGATGAGTTCACCAAACATGTCACCAGTGAATGTTTGGGGTGGATGAGGCAGCAAAGG
Seq A exon
GCGGAGATGGACATGGTGGCCTGGGGTGTGGACCTGGCCTCAGTGGAGCAGCACATTAACAGCCACCGGGGCATCCACAACTCCATCGGCGACTATCGCTGGCAGCTGGACAAAATCAAAGCCGACCTG
Seq C2 exon
CGCGAGAAATCTGCGATCTACCAGTTGGAGGAGGAGTATGAAAACCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096696-'8-6,'8-5,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGCCCTTTATAAAGCCA
R:
CAGCAGGTTTTCATACTCCTCCT
Band lengths:
203-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains