BtaEX6099225 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015106 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr23:47694295-47699119:-
Coord C1 exon
chr23:47698945-47699119
Coord A exon
chr23:47695216-47695344
Coord C2 exon
chr23:47694295-47694345
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGTCTCCCGTGGCAGGCG
3' ss Score
10.26
5' ss Seq
CTGGTACTT
5' ss Score
4.74
Exon sequences
Seq C1 exon
GCTGCTGCAGCTGCAGGAACAGATGCGAGCCCTCTACAAAGCCATCAGCGGCCCCCGCGTCCGCAGGGCCAGCTCCAAGGGCGGCGGAGGGTACACCTGCCAGAGTGGCTCCGGGTGGGACGAATTCACCAAGCGCCTCACCAGCGAGTGTCTGGGGTGGATGAGGCAGCAGAGG
Seq A exon
GCGGAGATGGACATGATGACCTGGGGCGTGGACCTGGCCTCGGTGGAGCAGCACATCAGCAGCCACAGGAGCATCCACAACACCATCGGGGACTACCGCTGGCAGCTGGACAAGATCAAAGCCGACCTG
Seq C2 exon
CGGGAGAAATCTGCAATCTACCAGTTGGAGGAGGAGTATGAAAACCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015106-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(20.0=32.2)
A:
PF0043516=Spectrin=FE(44.2=100)
C2:
PF0043516=Spectrin=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCAGGAACAGATGCG
R:
AGTAGGTTTTCATACTCCTCCTCCA
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]