GgaEX6020307 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64634328-64638368:-
Coord C1 exon
chr2:64638194-64638368
Coord A exon
chr2:64635481-64635609
Coord C2 exon
chr2:64634328-64634378
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTCCCTTTTTCCTAGGCT
3' ss Score
9.09
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
GCTGCTCCAACTTCAAGAGCAAATGCGAGCTCTGTACAAAGCCATTAGTGTTCCCCGTGCCAGGAGGGCCAGCTCCAAAGGTGGTGGTTGCTACTCCTCTCAGAGTGGTTCAGGCTGGGATGAGTACACAAAACGTGTGACAAGTGAATGCTTAAATTGGATGAGGCAACAGAAG
Seq A exon
GCTGAAATGGAGCTGGTGAAATGGGGGTTTGATGCAGCATCTATTGAGCAACAGATTAGTGACCATAGAAGAACTCACAATGCCATTGGAGACTATCGCTGGCACCTGGACAAAGTCAAAACAGATCTG
Seq C2 exon
CGTGAGAAGGCTGCCGTTCACCAGCTGGAGGAAGAATACGAAGGACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'2-4,'2-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(15.9=28.8)
A:
PF0043516=Spectrin=FE(39.3=100)
C2:
PF0043516=Spectrin=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAACTTCAAGAGCAAATGC
R:
GCAGTCCTTCGTATTCTTCCTCC
Band lengths:
220-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]