HsaEX6045704 @ hg19
Exon Skipping
Gene
ENSG00000096696 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:3052]
Coordinates
chr6:7559459-7564019:+
Coord C1 exon
chr6:7559459-7559633
Coord A exon
chr6:7562885-7563013
Coord C2 exon
chr6:7563969-7564019
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTCTTTGTGTCGCAGGCG
3' ss Score
10
5' ss Seq
CTGGTACTT
5' ss Score
4.74
Exon sequences
Seq C1 exon
GCTTCTTCAGCTCCAAGAGCAAATGCGAGCCCTTTATAAAGCCATCAGTGTCCCTCGAGTCCGCAGGGCCAGCTCCAAGGGTGGTGGAGGCTACACTTGTCAGAGTGGCTCTGGCTGGGATGAGTTCACCAAACATGTCACCAGTGAATGTTTGGGGTGGATGAGGCAGCAAAGG
Seq A exon
GCGGAGATGGACATGGTGGCCTGGGGTGTGGACCTGGCCTCAGTGGAGCAGCACATTAACAGCCACCGGGGCATCCACAACTCCATCGGCGACTATCGCTGGCAGCTGGACAAAATCAAAGCCGACCTG
Seq C2 exon
CGCGAGAAATCTGCTATCTACCAGTTGGAGGAGGAGTATGAAAACCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096696-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(20.4=32.2)
A:
PF0043516=Spectrin=FE(45.2=100)
C2:
PF0043516=Spectrin=FE(17.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGCCCTTTATAAAGCCA
R:
CAGCAGGTTTTCATACTCCTCCT
Band lengths:
203-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)