DreEX0028429 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1775899-1791628:+
Coord C1 exon
chr2:1775899-1776091
Coord A exon
chr2:1791102-1791227
Coord C2 exon
chr2:1791569-1791628
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTGTGTGTTGTAGAGA
3' ss Score
10.04
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
TTTGGAGGACTGTCATAGCTTTTATGCAGACATTCGCAACTCCATCACGGGCACCACCATCAGGAGGACTGGCGGCACCGTCAGCGGCACCATCGGTGGCACCATCAGTGGCACCATTGGTGGCACTGTCGGCGGCTGGGACGATCCCAGCAAGAGCTTTCAGGACGCACTGTCATGGATCAACCAGAAGAAG
Seq A exon
AGACTCATTGAAACGTCAGGCTTCGGTGAAAATTCAGAAGCCATTAGCCAACAAATCCTGAATCACAACAAGTTCCACAGTTCAATCCAGAGAAGCCAGGAGGTGGACAGAGCCCGCGACGATCTG
Seq C2 exon
ATGCAGAGCAGGGAAAAGGCTGGACTACATGCTCTGGACCAAGAGTGGGACAGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.310 C2=0.150
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACTGTCATAGCTTTTATGCA
R:
AACTGTCCCACTCTTGGTCCA
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]