RnoEX6053424 @ rn6
Exon Skipping
Gene
ENSRNOG00000013928 | Dsp
Description
desmoplakin [Source:RGD Symbol;Acc:1305794]
Coordinates
chr17:27309928-27312408:-
Coord C1 exon
chr17:27312280-27312408
Coord A exon
chr17:27311358-27311408
Coord C2 exon
chr17:27309928-27310089
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCCTTATCTTCCAGCGT
3' ss Score
10.77
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCGGAAATGGACCTGATGGCCTGGGGTGTGGACTCTGGTTCAGTGGAGCAGCACATCAACAGCCACAGGAGTATCCACAATGCCATCGGAGACTACCGCTGGCAACTGGACAAGATCAAAGCAGACCTG
Seq A exon
CGTGAGAAGTCCGCAATCTATCAATTGGAGGAGGAATATGAAAACCTGCTG
Seq C2 exon
AAAGCCTCCTTCGAGAGGATGGACCACCTGCGCCAGTTGCAAAACATCATCCAGGCCACCTCGAGAGAGATCATGTGGATCAATGACTGTGAGGAGGAGGAGCTGCTGTATGACTGGAGCGACAAGAACACAAACATCGCTCAGAAGCAGGAGGCCTTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013928-'3-16,'3-5,9-16=AN
Average complexity
A_C3
Mappability confidence:
96%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGATTTCCTCACCTCTTGA
R:
AGCTGCCTATGACGTCAGCTA
Band lengths:
135-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]