MmuEX6057989 @ mm9
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38264648-38267098:+
Coord C1 exon
chr13:38264648-38264776
Coord A exon
chr13:38265687-38265737
Coord C2 exon
chr13:38266937-38267098
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGCGTTTTCTTATCTTCCAGCGT
3' ss Score
10.49
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GAGGAAATGGACCTGATGGCCTGGGGTGTGGACGCTGGTTCAGTGGAACAGCACATCAATAGCCACAGGAGCATCCACAACACCATTGGGGACTACCGCTGGCAGCTGGACAAGATCAAAGCAGACCTG
Seq A exon
CGTGAGAAGTCAGCAATCTACCAGTTGGAGGAGGAATATGAAAACCTGCTG
Seq C2 exon
AAAGCCTCCTTCGAGAGGATGGACCACCTGCGCCAGCTGCAGAACATCATCCAGGCCACCTCTCGAGAGATCATGTGGATCAATGACTGCGAGGAGGAGGAGCTGCTCTATGACTGGAGCGACAAGAACACCAACATCGCTCAGAAGCAGGAGGCCTTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCCACAACACCATTGGG
R:
ATGATCTCTCGAGAGGTGGCC
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: