GgaEX1021088 @ galGal3
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
NA
Coordinates
chr2:65712636-65714917:-
Coord C1 exon
chr2:65714789-65714917
Coord A exon
chr2:65713636-65713686
Coord C2 exon
chr2:65712636-65712797
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATATTTGCTCTCTGTTTCAGCGT
3' ss Score
11.7
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGAAATGGAGCTGGTGAAATGGGGGTTTGATGCAGCATCTATTGAGCAACAGATTAGTGACCATAGAAGAACTCACAATGCCATTGGAGACTATCGCTGGCACCTGGACAAAGTCAAAACAGATCTG
Seq A exon
CGTGAGAAGGCTGCCGTTCACCAGCTGGAGGAAGAATACGAAGGACTGCTG
Seq C2 exon
AAATACTCCTTTGAGAGAATGGATCAGCTCCGTCAATTCCAGAACCTTATCCAAGCAACCAGCAGAGAGATCATGTGGATCAATGACTGTGAGGAAGAAGAGCTTCTCTACGACTGGAGCGACAGGAACACAGATATCTCCAGGAAGCAGGAGGCCTTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGTTTGATGCAGCATCTA
R:
TGGAATTGACGGAGCTGATCC
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]