HsaEX6045703 @ hg19
Exon Skipping
Gene
ENSG00000096696 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:3052]
Coordinates
chr6:7562885-7565753:+
Coord C1 exon
chr6:7562885-7563013
Coord A exon
chr6:7563969-7564019
Coord C2 exon
chr6:7565592-7565753
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTGTTGTCTTCTAGCGC
3' ss Score
10.66
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCGGAGATGGACATGGTGGCCTGGGGTGTGGACCTGGCCTCAGTGGAGCAGCACATTAACAGCCACCGGGGCATCCACAACTCCATCGGCGACTATCGCTGGCAGCTGGACAAAATCAAAGCCGACCTG
Seq A exon
CGCGAGAAATCTGCTATCTACCAGTTGGAGGAGGAGTATGAAAACCTGCTG
Seq C2 exon
AAAGCGTCCTTTGAGAGGATGGATCACCTGCGACAGCTGCAGAACATCATTCAGGCCACGTCCAGGGAGATCATGTGGATCAATGACTGCGAGGAGGAGGAGCTGCTGTACGACTGGAGCGACAAGAACACCAACATCGCTCAGAAACAGGAGGCCTTCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096696-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(45.2=100)
A:
PF0043516=Spectrin=FE(17.2=100)
C2:
PF0043516=Spectrin=PD(12.9=22.2),PF0043516=Spectrin=PU(41.0=79.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGCACATTAACAGCCA
R:
GGACGTGGCCTGAATGATGTT
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)