BtaEX6099226 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015106 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr23:47693245-47695344:-
Coord C1 exon
chr23:47695216-47695344
Coord A exon
chr23:47694295-47694345
Coord C2 exon
chr23:47693245-47693406
Length
51 bp
Sequences
Splice sites
3' ss Seq
CGCTGTTGGTCTTCTTCTAGCGG
3' ss Score
7.72
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCGGAGATGGACATGATGACCTGGGGCGTGGACCTGGCCTCGGTGGAGCAGCACATCAGCAGCCACAGGAGCATCCACAACACCATCGGGGACTACCGCTGGCAGCTGGACAAGATCAAAGCCGACCTG
Seq A exon
CGGGAGAAATCTGCAATCTACCAGTTGGAGGAGGAGTATGAAAACCTACTG
Seq C2 exon
AAAGCGTCCTTCGAGAGGATGGACCACCTTCGGCAGCTGCAGAACATCATCCAGGCCACGTCCCGCGAGATCATGTGGATCAACGACTGTGAGGAGGAGGAGCTGCTGTATGACTGGAGCGACAGGAACACCAACATCGCCCAGAAGCAGGAGGCCTTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015106-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(44.2=100)
A:
PF0043516=Spectrin=FE(16.8=100)
C2:
PF0043516=Spectrin=PD(14.7=25.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGACAAGATCAAAGCCG
R:
TCATACAGCAGCTCCTCCTCC
Band lengths:
139-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]