GgaEX1021088 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64633328-64635609:-
Coord C1 exon
chr2:64635481-64635609
Coord A exon
chr2:64634328-64634378
Coord C2 exon
chr2:64633328-64633489
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATATTTGCTCTCTGTTTCAGCGT
3' ss Score
11.7
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGAAATGGAGCTGGTGAAATGGGGGTTTGATGCAGCATCTATTGAGCAACAGATTAGTGACCATAGAAGAACTCACAATGCCATTGGAGACTATCGCTGGCACCTGGACAAAGTCAAAACAGATCTG
Seq A exon
CGTGAGAAGGCTGCCGTTCACCAGCTGGAGGAAGAATACGAAGGACTGCTG
Seq C2 exon
AAATACTCCTTTGAGAGAATGGATCAGCTCCGTCAATTCCAGAACCTTATCCAAGCAACCAGCAGAGAGATCATGTGGATCAATGACTGTGAGGAAGAAGAGCTTCTCTACGACTGGAGCGACAGGAACACAGATATCTCCAGGAAGCAGGAGGCCTTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(39.3=100)
A:
PF0043516=Spectrin=FE(15.0=100)
C2:
PF0043516=Spectrin=PD(26.2=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGTTTGATGCAGCATCTA
R:
TGGAATTGACGGAGCTGATCC
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]